hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/msk/msk07136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0085  ( 263 res)   msk07136

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Mtp      Golgi 4-transmembrane spanning transporter     560.7   9.8e-165   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Mtp        1/1      32   262 ..     1   235 []   560.7 9.8e-165

Alignments of top-scoring domains:
Mtp: domain 1 of 1, from 32 to 262: score 560.7, E = 9.8e-165
                   *->ivmsvLLlIllsVEvAhpkssCklskmgYLRiADLlSSFLLItvlfn
                       vmsvLL+I+++VEvA++k+sC+++km+YLR+ADLlSSFLLI+vlf+
   mKIAA0085    32    -VMSVLLFIEHVVEVARGKVSCRFFKMPYLRMADLLSSFLLIGVLFI 77   

                   islSeLiGvvKNREKYlleFlsdqnmcvllalsvLlgliielpaYgalas
                   is+S+L+GvvKNREKYl++Fls+q+m++ll+l++Llg++ielpaY++la 
   mKIAA0085    78 ISISLLFGVVKNREKYLIPFLSLQIMDFLLCLLTLLGSYIELPAYLKLA- 126  

                   RsrraawkiPffcyqLfDFcLsiLvaiSslmyvptileyksqlpmNYfPy
                   R+r++++k+P++++qL+DFcLsiL+++Ss+m+vpt+l++ks+++mNY+P+
   mKIAA0085   127 RPRPGPSKVPLMTLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPS 176  

                   qdDvlhvqficLllIvlvffivvLiFKvYLikCVWnCYkyInnrNsseva
                   q++v+h+qfi+++lI++v+fi+vLi+KvY++kCV++CYk+++++Ns++++
   mKIAA0085   177 QEGVPHSQFINMMLIFSVAFITVLILKVYMFKCVYTCYKFLKHMNSAMED 226  

                   vyskmedPtkvvLPsYEeAlSLPvktPekePpPPylSa<-*
                   ++skm++  kv+LPsYEeAlSLP+ktPe++P+PP++S+   
   mKIAA0085   227 SSSKMFL--KVALPSYEEALSLPPKTPEGDPAPPPYSE    262  

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