hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01670/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0080  ( 353 res)   mbh01670

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)     164.8    8.4e-45   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
C2         1/2      95   199 ..     1    92 []    75.6  6.3e-18
C2         2/2     229   345 ..     1    92 []    90.2  2.4e-22

Alignments of top-scoring domains:
C2: domain 1 of 2, from 95 to 199: score 75.6, E = 6.3e-18
                   *->tLtvkiisArnLp.........DPYVkvs.........kTkvvkktl
                       L v+i +A++Lp  ++ + ++DPY+k++  ++++++ kT+v +ktl
   mKIAA0080    95    ALVVTIQEAHGLPvmddqtqgsDPYIKMTilpdkrhrvKTRVLRKTL 141  

                   sgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvti
                       Pv++E   tF+F+v+p ++ ++  L++ V ++++ +++d+iG+v +
   mKIAA0080   142 ---DPVFDE---TFTFYVIPysqlqdLvLHFLVLSFdrfsrdDVIGEVMV 185  

                   ppnnahqhsadglihlsell.ggrh.kl<-*
                   p              l  ++++ ++ +l   
   mKIAA0080   186 P--------------LAGVDpSTGKvQL    199  

C2: domain 2 of 2, from 229 to 345: score 90.2, E = 2.4e-22
                   *->tLtvkiisArnLp.........DPYVkvs...........kTkvvkk
                      ++tv +++Ar+Lp+ + ++ +++PYVkv    ++++  ++kT+v+k+
   mKIAA0080   229    RMTVVVLKARHLPkmditglsgNPYVKVNvyygrkriakkKTHVKKC 275  

                   tlsgfNPvWnEesetFeFevpp.....s.LeieVyDk......dfiGrvt
                   tl   NPv+nE   +F +++p +  ++ ++e+ V D++++++++++Gr++
   mKIAA0080   276 TL---NPVFNE---SFIYDIPTdllpdIsIEFLVIDFdrttknEVVGRLI 319  

                   ippnnahqhsadg..lihlsell.ggrh.kl<-*
                   ++     +hs+++++++h++e+++++r++     
   mKIAA0080   320 LG-----AHSVTTsgAEHWREVCeSPRKpIA    345  

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