hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh00301/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0079 ( 1028 res) mbh00301 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Sec23_trunk Sec23/Sec24 trunk domain 464.8 7e-136 1 Sec23_helical Sec23/Sec24 helical domain 161.6 1.3e-44 1 Sec23_BS Sec23/Sec24 beta-sandwich domain 128.8 9.8e-35 1 zf-Sec23_Sec24 Sec23/Sec24 zinc finger 80.4 3.8e-20 1 Gelsolin Gelsolin repeat 76.7 4.8e-19 1 Extensin_2 Extensin-like region -137.0 0.39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Extensin_2 1/1 3 292 .. 1 385 [] -137.0 0.39 zf-Sec23_Sec24 1/1 355 394 .. 1 42 [] 80.4 3.8e-20 Sec23_trunk 1/1 433 680 .. 1 281 [] 464.8 7e-136 Sec23_BS 1/1 682 766 .. 1 106 [] 128.8 9.8e-35 Sec23_helical 1/1 778 881 .. 1 108 [] 161.6 1.3e-44 Gelsolin 1/1 895 970 .. 1 96 [] 76.7 4.8e-19 Alignments of top-scoring domains: Extensin_2: domain 1 of 1, from 3 to 292: score -137.0, E = 0.39 *->lltlvvalvslslpseasakYsYsSPPPpekpY...vYkSPPpPspk + ++ v s p+ + Y P p Y+++ Y P P+ mKIAA0079 3 IGDALIMNVNQSAPPVPP--YGQNQPIYP--GYhqsSYGGQPGPAA- 44 yvykSPPPpkkpY.vYsSPPPPsyvykSPPPPkpyvYkSPPpPkyvYkSP p pY+ Y P P y+ PP v + PP +S mKIAA0079 45 --------PATPYgAYNGPVPG---YQQAPPQ--GVPRAPP------SSG 75 PpPvykYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSP pP + P t + + P+ + + +P + mKIAA0079 76 APPASAAQVPCGQT-TYGQFGQGDIQNGPSSTAQMQRVPGSQ-----QFG 119 PPPpyvYkspPpPvkkripyvYkSPPPPpP.YvYkSpPppvkkyiykspp PP +v p v + py PPP+ + + S P ++ +spp mKIAA0079 120 PPLAPVVSQPA--VLQ--PYG----PPPTStQGFGSLPVNQANH-VSSPP 160 ppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppky +p + + + PP+P PPPP mKIAA0079 161 APALP-PGTQMTGPPVP-----------------PPPPM----------- 181 VYkSpPpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpP Sp P y + + ++ pa + + Y SP P + + S P P mKIAA0079 182 --HSPQQPG--YQLQ----QNGSFGPARGPQPNYESPYPGAPTFGSQPGP 223 ykpptppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvy P PP + p ip +++ + ++ k + mKIAA0079 224 P----------QPLPP----KRLDPDAIPS--PQLNELPPQQKTRHRID- 256 sPPPPyvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-* P + P P+ v + + s P + + PP + mKIAA0079 257 ----P---DAIPSPIQVIEDDRNNRGSEPFVTGVRGQVPPLVT 292 zf-Sec23_Sec24: domain 1 of 1, from 355 to 394: score 80.4, E = 3.8e-20 *->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgnrNdvPpdY<-* +P+RC +rC+AY++P ++f++++rr+qC fC+++NdvPp+Y mKIAA0079 355 GPLRC--NRCKAYMCPLMTFIEGGRRFQCSFCSCVNDVPPQY 394 Sec23_trunk: domain 1 of 1, from 433 to 680: score 464.8, E = 7e-136 *->PqPPvFlFvIDVSynAiksGlLaalkesLkqsLdlLPng....dpra P+PP+F+F+IDVSynAi++Gl+ +l+e+Lk+ Ld+LP++++ +++ + mKIAA0079 433 PSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDYLPREggaeESAI 479 lVGfITfDstvHFynlssslcsKsYVFrqpkmlvvsDlqdmFGLgsavrp +VGf+T+++++HFyn++ssl +qp+m+vvsD+ dmF mKIAA0079 480 RVGFVTYNKVLHFYNVKSSL-------AQPQMMVVSDVADMF-------- 514 sssggAgngllPlpadrlLvplsecrqvledLLeqLPkDmFpvtagkrpe +Pl+ d++Lv++se+r+v+++LL+q+P+ mF++t +++e mKIAA0079 515 ----------VPLL-DGFLVNVSESRAVITSLLDQIPE-MFADT--RETE 550 ralGpALqaAflLLkavfpntGGkImvFqggLPTvGpGGkLksrldePiR +++ p++qa++++Lka++ ++Gk+++F+++LP+++++GkLk+r+d+ mKIAA0079 551 TVFAPVIQAGMEALKAAE--CAGKLFLFHTSLPIAEAPGKLKNRDDR--- 595 shhdtdKdkaklvkkadkFYksLAkecvaqGisVDLFafsldYvDvAtlg ++++tdK+k+ +++++ Y++LAkecvaqG++VDLF+f+++YvDvAtl+ mKIAA0079 596 KLINTDKEKTLFQPQTG-TYQTLAKECVAQGCCVDLFLFPNQYVDVATLS 644 qlsrlTGGqvylypsFqytapvDtskFkqdlkRyftrd<-* ++++lTGG+vy+y Fq ++D+++F++dl+R++++ mKIAA0079 645 VVPQLTGGSVYKYACFQ--VENDQERFLSDLRRDVQKV 680 Sec23_BS: domain 1 of 1, from 682 to 766: score 128.8, E = 9.8e-35 *->gfnAvlrVRtSkglkisgfiGnffsrnkKapsVsdteIGiGgTdlwk gf+Av+rVRtS+g++ +f+G f++ ++ ++++ mKIAA0079 682 GFDAVMRVRTSTGIRAVDFFGAFYMS-------NT--------TDVE 713 lpsldpdqsyavefdiddklktpipqdrkqdvyfQfatlYthssGerRiR l++ld d++++vef++dd l+ + + +Q+a+lYt++ G+rR+R mKIAA0079 714 LAGLDGDKTVTVEFKHDDRLNE------ENGALLQCALLYTSCAGQRRLR 757 VtTlalpvt<-* +++lal+++ mKIAA0079 758 IHNLALNCC 766 Sec23_helical: domain 1 of 1, from 778 to 881: score 161.6, E = 1.3e-44 *->qeAiavlmAklAvekaltesslkdardwldnalidiLaaYrkncask +++++++mAk A+ +l+ s+ k +rd+l+ ++++iLa+Yrkncas+ mKIAA0079 778 TDTLINYMAKFAYRAVLN-SPVKTVRDTLITQCAQILACYRKNCASP 823 ndpsqliLpecasLkLlPlymlaLlKspalrvgatnnslDeRayarnllr ++++qliLpe ++kLlP+y++++lKs++l++g +++++D+Ray+r+l++ mKIAA0079 824 SSAGQLILPE--CMKLLPVYLNCVLKSDVLQPG-AEVTTDDRAYVRQLVS 870 slpldqllkmi<-* s+++++ +++ mKIAA0079 871 SMDVAETNVFF 881 Gelsolin: domain 1 of 1, from 895 to 970: score 76.7, E = 4.8e-19 *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyiiflWvGkkssqWR + +pp+v++s e l+sgd+yLL ng ++f+WvG s q mKIAA0079 895 STAEPPAVRASEERLSSGDIYLLENGL------NLFVWVG-ASVQ-- 932 KagYhdPdeklaaallavelddaaqikqdrfplpvvdrvvqgkeparFl< + ++++++++++ +qi+++++ lpv+d+ +++k+ + ++ mKIAA0079 933 -------QGVVQSLFNVSSF---SQITSGLSVLPVLDN-PLSKKVRGLI 970 -* mKIAA0079 - - //