hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj09377/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0076  ( 1508 res)   mfj09377

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cullin   Cullin family                                  213.1    4.2e-60   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Cullin     1/1     841  1355 ..     1   656 []   213.1  4.2e-60

Alignments of top-scoring domains:
Cullin: domain 1 of 1, from 841 to 1355: score 213.1, E = 4.2e-60
                   *->WekLrdaidqilt..nlknvsplsyeeLYtaVYniCtstsavphklg
                      We L + + q +t+++++++s+l +                      
   mKIAA0076   841    WEALVSPLVQNITspDEDSTSSLGW---------------------- 865  

                   ekLYnrLkeyl.........eeyvkalrkslleisddenlLkeyikeWkd
                         L +yl+ ++   ++++ ++a                        
   mKIAA0076   866 -----LLDQYLgcreaaynpQSRAAAF----------------------- 887  

                   fstsmkmindifmYLdRyyvkrnidgkkevyeiyeLgLdiWreelfdnik
                                                                     
   mKIAA0076     - -------------------------------------------------- -    

                   drlidalLdlIekeRkGeaidrliknvvdmlvsLgldekDmkkqklkvYk
                                                                     
   mKIAA0076     - -------------------------------------------------- -    

                   edFEkpFLeaTseFYkkEsskfLqensvseYlkkvEkrLeeEeeRvrlYL
                                                                     
   mKIAA0076     - -------------------------------------------------- -    

                   hsstekklievvekvLIekHlefLlmehsefqLldnnkleDLrrMYrLls
                                                                     
   mKIAA0076     - -------------------------------------------------- -    

                   RvpnGLeplrkilekhvkkeGlalvskla.....................
                                +++v++  + lv+ + ++  ++    ++++++++ ++
   mKIAA0076   888 -------------SSRVRRLTHLLVHVEPreaappvvaiprskgrnrihd 924  

                   ..................................aetdpkdyVeeLLelh
                    +   +++ +++  ++ ++  ++  +++ ++  +a++++ d+V + +e +
   mKIAA0076   925 wsylitrglpssimknltrcwrsvveeqmnkfltASWKDDDFVPRYCERY 974  

                   dkydslvneaFnnDplFlnaLdkAfesfiNsnvvtkaskspELLAkYcDd
                     +++  +e F+  + Fl a+++ + + + +  +++a++ +E++A+++D+
   mKIAA0076   975 YVLQKSSSELFGPRAAFLLAMRNGCADAVLRLPFLRAAHVSEQFARHIDQ 1024 

                   lLKKgs....KgleeeeleekldkiivlfkyiedKDvFekfYrkmLAkRL
                    +++++ ++ +g+e+ ++ +++ + + +f+ +e  ++Fe++Y++++A+RL
   mKIAA0076  1025 RIQGSRmggaRGMEMLAQLQRCLESVLIFSPLEIATTFEHYYQHYMADRL 1074 

                   LngkSasLddaEkrmiekLKqvecGyefTsKLegMfkDislSkelnnsFk
                   L+  S +L++a +++i+ +++        + ++ M++ +++S+el+++F+
   mKIAA0076  1075 LSVGSSWLEGAVLEQIGPCFP-------SRLPQQMLQSLNVSEELQRQFH 1117 

                   nhlennndnldlkled.e................................
                    ++ +++d+++lkled+e++ +  ++++++++++++++  ++       +
   mKIAA0076  1118 VYQLQQLDQELLKLEDtEkkiqvahedsgredkskkeeaigeaaavamae 1167 

                   ..........ene.E.............gidlsvkvLstgfWPtlp.eps
                   ++++++++++e+e+E++++++++  +++++++ v+v ++ fWP  + + +
   mKIAA0076  1168 eedqgkkeegEEEgEgedeeeeryykgtMPEVCVLVVTPRFWPVASvCQM 1217 

                   in..fnLPeelekalerFeefYlkkhsgp..d....RkLtWlhsLGkgel
                    n+  +LP +l+ ++  +++fY+k++s ++ +++++R+L+W++  G++e+
   mKIAA0076  1218 LNpaTCLPAYLRGTINHYTNFYSKSQSRSslEkepqRRLQWTW-QGRAEV 1266 

                   kaefndgtkskyeltVstyQmavLLLFNdkeeltyeelqeatqipedeLr
                   ++         ++l+Vst+Qm++LL+ N+++e+++e lq+  ++p+d L 
   mKIAA0076  1267 QFGG-------QILHVSTVQMWLLLHLNNQKEVSVESLQAISELPPDVLH 1309 

                   rtLqsLlkakvllllllryetpg.ekspkdkeispntkfslNenft<-*
                   r++ +L++ +++l+l +++++pg++ +  d++ +p+ +  +   +    
   mKIAA0076  1310 RAIGPLTSSRGPLDLQEQKNVPGgVLKIRDDSEEPRPRRGNVWLIP    1355 

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