hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj01265/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0074  ( 611 res)   mpj01265

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Barren   Barren protein                                1298.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Barren     1/1       1   610 [.     1   836 []  1298.6        0

Alignments of top-scoring domains:
Barren: domain 1 of 1, from 1 to 610: score 1298.6, E = 0
                   *->ltpservkPasrpakapYqerisaplTPvLedfpsNDDEkEReqaRr
                                                                     
   mKIAA0074     -    ----------------------------------------------- -    

                   sRvldlqfstadSpallaSpifargsqdetetipklentQItEhysnCIK
                                                                     
   mKIAA0074     - -------------------------------------------------- -    

                   LssENKIttKNAfgLhLIDflseILKhkDENkeeTNFKvAagTLeAStKI
                            KNAfgLhLIDf+seILK+kD  +e+TNFKvAagTL+AStKI
   mKIAA0074     1 ---------KNAFGLHLIDFMSEILKQKD--AEPTNFKVAAGTLDASTKI 39   

                   YavRVDsVHaDvYrVLGGLgkdgpddltDkeiaagevedgPQGEqasgtg
                   YavRVD+VHaDvYrVLGGLgkd+p                PQGE+ s++g
   mKIAA0074    40 YAVRVDAVHADVYRVLGGLGKDTP----------------PQGEE-SHSG 72   

                   qdstqqaakeakkkPkkkKkplsTiEkNlnaLNvSelDracavDPlFqKt
                   ++st+++++++k++++kkK++++TiE+Nl+++NvSe+D++cavDP+FqKt
   mKIAA0074    73 DGSTLETERTKKPAKPKKKQSCKTIEQNLSNINVSEADGKCAVDPMFQKT 122  

                   aAsFDEsstaGvfLstLkcqsYrSELlFdsdeifvktlSSaeEeqelpti
                   aAsFDE+st+GvfLstL+cq+YrSELlF+sd   ++tlSS +E++elp+ 
   mKIAA0074   123 AASFDECSTTGVFLSTLHCQDYRSELLFPSD---MQTLSS-GEPLELPD- 167  

                   DLgfVdGLALLADmPrsTlvavllqyaaTdLkvkflarleQclLnmaEkr
                    LgfVd                     +TdL+    a+l+Qc    +E+r
   mKIAA0074   168 -LGFVD---------------------MTDLE----ASLQQC----VEDR 187  

                   eLcPSLaGfqftSAPNPKSANEKAieqwdsEthnEslsalvDkqfkKsdq
                   +LcPSLaGfqf              ++wdsEthnEs+salvDk fkK+dq
   mKIAA0074   188 PLCPSLAGFQF--------------TKWDSETHNESVSALVDK-FKKNDQ 222  

                   vFDINAEveddpdLDDegyddpdgplvdEfdsNDveEltaagdaEefrsw
                   vFDINAE+edd++      d+pdgplv++f++ND+++l+aagd+Eefrsw
   mKIAA0074   223 VFDINAEAEDDEE------DVPDGPLVEDFVDNDEPDLSAAGDHEEFRSW 266  

                   keaCqvqskViNqeevislgdeDIetmcpllsvkpgEYSYfspdrtmsmW
                   ke+Cqvqs+   qeevisl+d+DI++mc++ls+kpgEYSYfsp rtm+mW
   mKIAA0074   267 KELCQVQSN---QEEVISLEDRDIQVMCSFLSMKPGEYSYFSP-RTMKMW 312  

                   AGPdHWkFRprrkqdvfaseidstdtaekrkKkaKKefELnFeRRAkalD
                   AGPdHW+FRpr+kq       d+t+++e++kK+aKK+fE+nF+   +++D
   mKIAA0074   313 AGPDHWRFRPRPKQ-------DATSCTEHKKKSAKKDFEINFD---DDID 352  

                   feNVtevyFFAqktkaatlLtKsNtlesqnprkTtLPtDFhYdpDnlikl
                   f    ++yF  qktkaat+LtKs tle+qn+++TtLPtDFhY++Dnli+l
   mKIAA0074   353 F----DAYF--QKTKAATILTKS-TLENQNWKATTLPTDFHYETDNLIQL 395  

                   eLkPsvrllKaaqepssdseqdedIeDyDynnpNDtsNfcpgLqaadftd
                   +LkP++r+lK++q++++++e++e+IeDyDynnpNDtsN+cpgLqaad   
   mKIAA0074   396 HLKPGKRSLKMDQDQKAKTEHYEEIEDYDYNNPNDTSNYCPGLQAAD--- 442  

                   AVPsddediddlAAEqAAEasflgPvGtlDLesdPchppktadenglitq
                      sd+e+ ddl         f++PvGtlDLesdP    kt++eng+i++
   mKIAA0074   443 ---SDYEETDDL---------FADPVGTLDLESDP----KTTQENGHISP 476  

                   enaenditvtedgeelvaaPqkVNKIevqYAKtAKkmDmKkLKkSmWSLL
                   en+++dit t+++ +lva+PqkVNKIe++YAKtAKkmDmKkLK+SmWSLL
   mKIAA0074   477 ENQGVDIT-TYQELNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLL 525  

                   qkssLNAqpeedipsnhkesgeEeakaevadeksFsgltkdLpDdrLppv
                   +k+s   ++e+d+++nh+esg+E+a++evadek++sgltkdL+ +rLpp+
   mKIAA0074   526 TKFS---RKEADTEANHTESGQEGAPEEVADEKKLSGLTKDLQ-TRLPPL 571  

                   MaQnLSppLAFaCLLHLANEkNLkLiGteDLsDvlIrQa<-*
                   MaQnLS+pLAFaCLLHLANEkNLkL+GteDLsDvl++Q+   
   mKIAA0074   572 MAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVMQG    610  

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