hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01793/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0071  ( 316 res)   mbg01793

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    88.2      1e-21   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/2      21    69 ..     1    53 []    38.7  8.1e-07
SANT       2/2     212   260 ..     1    53 []    49.5  4.4e-10

Alignments of top-scoring domains:
SANT: domain 1 of 2, from 21 to 69: score 38.7, E = 8.1e-07
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                        +eWt e+  l+++a   +G    + +++I ++lp ++  ++++++
   mKIAA0071    21    FPDEWTVEDKVLFEQAFSFHG----KTFHRIQQMLPDKSIASLVKFY 63   

                   rnllkp<-*
                   + ++k+   
   mKIAA0071    64 YSWKKT    69   

SANT: domain 2 of 2, from 212 to 260: score 49.5, E = 4.4e-10
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                         +Wt eE+ l ++a++kyG    +d+++I++ +++++++q+++++
   mKIAA0071   212    CNARWTTEEQLLAVQAIRKYG----RDFQAISDVIGNKSVVQVKNFF 254  

                   rnllkp<-*
                    n+ ++   
   mKIAA0071   255 VNYRRR    260  

//