hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01793/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0071  ( 316 res)   mbg01793

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Myb_DNA-binding Myb-like DNA-binding domain              88.2    1.7e-22   2
FlaC_arch       Flagella accessory protein C (FlaC)     -17.6       0.91   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Myb_DNA-binding   1/2      22    67 ..     1    65 []    41.9  1.4e-08
Myb_DNA-binding   2/2     213   258 ..     1    65 []    46.3    7e-10
FlaC_arch         1/1     152   273 ..     1   126 []   -17.6     0.91

Alignments of top-scoring domains:
Myb_DNA-binding: domain 1 of 2, from 22 to 67: score 41.9, E = 1.4e-08
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt e++ l+++a++ hGk            +++I ++l+     
   mKIAA0071    22    PDEWTVEDKVLFEQAFSFHGKT-----------FHRIQQMLP----- 52   

                   nvlgrtaeqcklryykyk<-*
                      +++  +++ +yy +k   
   mKIAA0071    53 ---DKSIASLVKFYYSWK    67   

Myb_DNA-binding: domain 2 of 2, from 213 to 258: score 46.3, E = 7e-10
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                        rWt eE++l v+a++k+G +           +  I++ +g     
   mKIAA0071   213    NARWTTEEQLLAVQAIRKYGRD-----------FQAISDVIG----- 243  

                   nvlgrtaeqcklryykyk<-*
                      +++++q+k+++ +y+   
   mKIAA0071   244 ---NKSVVQVKNFFVNYR    258  

FlaC_arch: domain 1 of 1, from 152 to 273: score -17.6, E = 0.91
                   *->eanEeLLarmneIEndLPKleisienlkKeledlrnElekInenvkd
                      e  E + a  +     L  l +++  +k +++++++    ++e +  
   mKIAA0071   152    EDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDG 198  

                   vmaLYEv..VSrdiNPFIGisKvtaeslektpeeLeseideLkkqVeelk
                    +  Y +++V +  N       +t+e+l  +   +++      + + +++
   mKIAA0071   199 GIEPYRLpeVIQKCNAR----WTTEEQLLAV-QAIRKYGRDF-QAISDVI 242  

                   ..ndlailkndil.yleqygvPDlDeiIqEVLeE<-*
                   +++ ++++kn  ++y+  + +   De++qE  +E   
   mKIAA0071   243 gnKSVVQVKNFFVnYRRRFNI---DEVLQEWEAE    273  

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