hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mpj/mpj03164/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0070 ( 632 res) mpj03164 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- lysS_bact lysS_bact: lysyl-tRNA synthetase 700.8 6.5e-207 1 genX genX: lysyl-tRNA synthetase-related protein 74.0 3.1e-18 1 aspS_arch aspS_arch: aspartyl-tRNA synthetase 51.1 2.4e-11 1 aspS_bact aspS_bact: aspartyl-tRNA synthetase -215.3 2.7e-09 1 asnS asnS: asparaginyl-tRNA synthetase -273.3 0.0065 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- asnS 1/1 143 610 .. 1 495 [] -273.3 0.0065 aspS_arch 1/1 145 610 .. 1 466 [] 51.1 2.4e-11 genX 1/1 264 610 .. 1 330 [] 74.0 3.1e-18 lysS_bact 1/1 107 612 .. 1 538 [] 700.8 6.5e-207 aspS_bact 1/1 138 626 .. 1 653 [] -215.3 2.7e-09 Alignments of top-scoring domains: asnS: domain 1 of 1, from 143 to 610: score -273.3, E = 0.0065 *->saaikdlleqvykavgeeVtvsGWvrtkRDsskkIiFLelnDGSslg + + l+ + + + +v G ++ kR s +k+iF +l+ mKIAA0070 143 FIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEG--V 187 piQaVingelneylfqllks...LttgssvsvtGkvvelsPgkgAPQpvE +Q+ n ++++++ ++++L g + v+G Pgk+ E mKIAA0070 188 KLQVMANSRNYKSEEEFVHInnkLRRGDIIGVEG-----NPGKT--KKGE 230 LkvknPvkkieVvGeAed..Pd.dYPlqkKeGHslEFLRdiaHLr..... L + + i ++++ P + l+ Ke +++ +++L ++ mKIAA0070 231 LSII--PQEITLLSPCLHmlPHlHFGLKDKE---TRY--RQRYLDlilnd 273 .lRtntlgAvmrVRnalsqaiheyFqkngFvkVspP...IlTsnDcEGAG +R + + VR+++++ i+ + ++ gF+++ +P +I+ + ++ mKIAA0070 274 fVRQKFI-----VRSKIITYIRSFLDELGFLEIETPmmnIIPGGAV---A 315 ElFkvsTLdLekLprndgkiDfskdFFGKeaYLTVSGQLyaEayAlALsk F + + L n+ + + + K L V G + mKIAA0070 316 KPFITY---HNELDMNLY-MRIAPELYHKM--LVVGG----------IDR 349 VyTFGPTFRAEKSnTsRHLSEFWMIEPEmAFanLnDllqliEtliKyiik Vy +G FR E + + H EF+ E mA a+ Dl+ E +++ +k mKIAA0070 350 VYEIGRQFRNEGIDLT-HNPEFTTCEFYMAYADYHDLMEITEKMLSGMVK 398 aVLenqqELLPkqFicsqennllkfLeknfdkdlikkleniinn.kFari ++ ++ ++ +++ + ++ F ri mKIAA0070 399 SITGS----------YKIT------YHPDGPEGQAYEVD---FTpPFRRI 429 tYtdAIeiLkesdnkekknFEyedfeWGiDLqteHERfLaEeyFKpQPVf +e L+++ ++k E f te R++ + + ++ mKIAA0070 430 SM---VEELEKA--LGVKLPETSLF------ETEETRKILDDICVA---- 464 VtdYPkdiKAFYMKlNSdDgkTVaavDlLaPkGiGE...........IIG KA + +++T+a L+ k +GE + + +++ I+ mKIAA0070 465 --------KA---VEC-PPPRTTAR---LLDKLVGEflevtcisptfICD 499 GSeREdDL.......dkLeeRmkemGldtdGalnWYlDL......RK... + + L + +++++ L+eR++ + ++ n Y +L+++ ++R + mKIAA0070 500 HPQIMSPLakwhrskEGLTERFELFVMKKE-ICNAYTELndpvrqRQlfe 548 .........................YGsvPHsGFGLGfERlvaYitGleN ++ + + ++++ +++ + +YG P +G G G +Rl ++t+ N mKIAA0070 549 eqakakaagddeamfidenfctaleYGLPPTAGWGMGIDRLTMFLTDSNN 598 IRDaIPFPRtpgninF<-* I+++ +FP ++ mKIAA0070 599 IKEVLLFP----AMKP 610 aspS_arch: domain 1 of 1, from 145 to 610: score 51.1, E = 2.4e-11 *->vysaDikpemdgdqeVl..lmgwVHeiRdlGgtliFvlLRdregliQ ++p +V+ ++ g++H R+ Gg liF LR Q mKIAA0070 145 QEYSHLQPGDHL-TDVTlkVAGRIHAKRASGGKLIFYDLRGEGVKLQ 190 ilvpkkkeGviskelfklikkLkkEsvvavkGkVkkvdePekekapgglE +++ ++ ++e + kL++ +++ v+G + k g l mKIAA0070 191 VMANSRNYKS-EEEFVHINNKLRRGDIIGVEGNPG-----KTKK--GELS 232 IiptklevlneakepLPldlteaskveAEldaaGlPvvnldTRLdaRflD Iip+++ l+ + LP + l + +TR +R+lD mKIAA0070 233 IIPQEITLLSPCLHMLPHLHFG-------LK-------DKETRYRQRYLD 268 LRrpk.vqAIFrIrsevlesvRefLaeegFiEVhTPKLvasatEGGtelF L v F +rs+++ +R fL e gF+E+ TP + + GG mKIAA0070 269 LILNDfVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIP--GGAVAK 316 p.itY...FereAFLgQSPQLyKQvLmaaglerVyEIgPiFRAEehnTrR p itY+++ + ++ P Ly +L++ g++rVyEIg FR E + + mKIAA0070 317 PfITYhneLDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLT- 365 HLnEaisiDiEmaFedhyedvmdiLeeLvvrvfedv............ae H E++ ma++d +d m+i e+++ + ++++ + + +++++e mKIAA0070 366 HNPEFTTCEFYMAYADY-HDLMEITEKMLSGMVKSItgsykityhpdgPE 414 kcakeiel...vrkeletlevk....LevPeekfeRltYdEai..eiana a e++++++ r+ ++e+++ + +Pe+ + + i ++i a mKIAA0070 415 GQAYEVDFtppFRRISMVEELEkalgVKLPETSLFETEETRKIldDICVA 464 kGkeikwgEDLsteaeKalGklvreemdglYFItdkwPteirPFYtMPdd k +e + + K++G ++ FI d P P mKIAA0070 465 KAVECPPPRTTARLLDKLVGEFLEVTCISPTFICD-HPQIMSPLAKWH-R 512 EdnPeiSksFDLmyrdlEisSGAqR....iHlydLLvEkiKakGLnPedP + + F L+ Ei ++++ + L E+ Kak ++ mKIAA0070 513 -SKEGLTERFELFVMKKEICNAYTElndpVRQRQLFEEQAKAKAAGDDEA 561 gf..kdYleaFkYGmPPHAGWGlGaeRlvMvllglkNiReavLFPRDrkR f ++ ++ a +YG+PP AGWG+G +Rl+M+l++ Ni e LFP mKIAA0070 562 MFidENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFP----A 607 LtP<-* + P mKIAA0070 608 MKP 610 genX: domain 1 of 1, from 264 to 610: score 74.0, E = 3.1e-18 *->KTGLkMdlldaWqPSAdIkNlLKRAkiiaeiRkFFkerGllEVeTPl L + l d + ++ R kii iR F e G+lE+eTP+ mKIAA0070 264 QRYLDLILNDFVR-----QKFIVRSKIITYIRSFLDELGFLEIETPM 305 LsdfpvtDlhlepfkteflepggeqnkvlWLsTSPEYhMKrLLsagkgpi + p + f+ e ++l + PE K L + g + mKIAA0070 306 MNIIPG-----GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRV 350 FQitkvFRNeEaGrlHnpEFtMLEWYrphydmlrLinEvddLLqqlld.c + i + FRNe + HnpEFt E Y d++ L++ + +L + + mKIAA0070 351 YEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSGMVKsI 400 peaEslsyq......eaFkrylgldplsaekselkElaekkdld....nv ++y +++++++a+ ++ p+ s El + +++ +++ + mKIAA0070 401 TGSYKITYHpdgpegQAYE--VDFTPPFRRISMVEELEKALGVKlpetSL 448 aeedEDrdTLlqllFievVEp..................qiGkerPtfvy +e++E r L VE ++++++ + ++ ++ ++ Ptf+ mKIAA0070 449 FETEETRKILDDICVAKAVECppprttarlldklvgeflEVTCISPTFIC 498 hFPerqaaLAqvstEDnrvAERFElyyKGiELANGfhEltdaeEqrkRfE P+ LA+ ++ ERFEl+ E N ++El d+ qr+ fE mKIAA0070 499 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFE 548 rdnkkRakrelPtlpiDedfikAledGMPdcsGvaLGiDRLvmlaLgkEe +k a+ + iDe+f Ale G+P +G +GiDRL m + + mKIAA0070 549 EQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNN 598 lveviafaVDrA<-* + ev+ f + mKIAA0070 599 IKEVLLFPAMKP 610 lysS_bact: domain 1 of 1, from 107 to 612: score 700.8, E = 6.5e-207 *->dlndelqtrleklgrlretgnnpypndkferthssaeflekyadlsg d+n++ + r++ +++l+ tg++pyp+ kf++++s ++f+ +y +l mKIAA0070 107 DPNQYYKIRSQAVQQLKVTGEDPYPH-KFHVDISLTQFIQEYSHLQP 152 eatleleekPelevsiaGrilalrfsggkatfitlqdesGlkndgqlqly ++ +l+ ++++ +aGri+a+r sggk+ f++l +e+ ++lq++ mKIAA0070 153 GD--HLT---DVTLKVAGRIHAKRASGGKLIFYDLRGEG-----VKLQVM 192 vnkddlGGpePdfyefdeylnfldlGdiigvtGypGpfktktgelslhvt n ++ e +f +++++l +Gdiigv+G p ktk+gels++ + mKIAA0070 193 ANSRNYKSEE-EFVHINNKL---RRGDIIGVEGNP--GKTKKGELSIIPQ 236 elqlltkalrplPdkwhGltdqetryrqryldlivnpdsrdtflkrskii e+ ll+++l++lP ++Gl+d etryrqryldli+n+ +r+ f++rskii mKIAA0070 237 EITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSKII 286 aairrflddrgflevetPllqvipgGanarPfithhnaldldlylriape ++ir+fld+ gfle+etP++++ipgGa a+Pfit+hn ld+ ly+riape mKIAA0070 287 TYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 336 lylkrlvvgGlekvyeigrnfrneGvdtthnpeftslefyqayadyedll ly k lvvgG+++vyeigr+frneG+d thnpeft++efy+ayady+dl+ mKIAA0070 337 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLM 386 dltenlfkflakellgttkitrlPvPktfpeltygdleldlkkpwkritm ++te++++ ++k+++g++kit++P + e+d+++p++ri+m mKIAA0070 387 EITEKMLSGMVKSITGSYKITYHP-----DGPEGQAYEVDFTPPFRRISM 431 ldalkkydlletgidfddlkddetakalakelgikyfevaedsgpltlgh +++l+k ++ + + ++++et k l + + e+++p t ++ mKIAA0070 432 VEELEKALGVKLP-ETSLFETEETRKILDDICVA---KAVECPPPRTTAR 477 ilnelfeeflehtliqtlPtfitgyPaeisPlakrnpsnpeltdrfelfi +l++l++efle t+i Ptfi ++P+++sPlak ++s+ +lt+rfelf+ mKIAA0070 478 LLDKLVGEFLEVTCIS--PTFICDHPQIMSPLAKWHRSKEGLTERFELFV 525 ggkeianafselndpldqrerfeaqlaekeagGnktddeaplldedfvea kei+na++elndp+ qr+ fe+q+++k+ag ddea+++de+f++a mKIAA0070 526 MKKEICNAYTELNDPVRQRQLFEEQAKAKAAG----DDEAMFIDENFCTA 571 leyGlPPtgGlGiGidrlvmlltdspsirdvllfpalrpdk<-* leyGlPPt+G+G+Gidrl m+ltds++i++vllfpa++p+ mKIAA0070 572 LEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPED 612 aspS_bact: domain 1 of 1, from 138 to 626: score -215.3, E = 2.7e-09 *->FmrtthycGqLsekhlGk.....tVtLaGWVkqrrRdlGgNLIFidL t ++ + s ++ G + ++ t ++aG ++ R Gg LIF dL mKIAA0070 138 ISLT-QFIQEYSHLQPGDhltdvTLKVAGRIH-AKRASGGKLIFYDL 182 RDrsGDiVQvvcdpdvskdalelak...gLrnEdvvqvkGkvsaRpegsi R Qv + +k + e + ++ Lr+ d++ v G g+ mKIAA0070 183 RGEGV-KLQVMANSRNYKSEEEFVHinnKLRRGDIIGVEGNP-----GKT 226 nrnldTgeiEilaeeitllNGkSktpPliieDFktdAeEerEDVRLKYRY ++ ge i+ eitll+ +P + E R + RY mKIAA0070 227 KK----GELSIIPQEITLLSPCLHMLPHLHF--GLKDKET----RYRQRY 266 LDL.RRPemqqrLklRhkvtkavRnfldqqGFlEIETPiLtKsTPEGA.. LDL + q + R+k++ +R+fld+ GFlEIETP+ P GA mKIAA0070 267 LDLiLNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNII-PGGAva 315 .........RDYLVPSRVhRSDGkgeFYALPQSPQLFKQLLMvsGvdRYY ++ + +++ D R+ P L+ L v+G+dR Y mKIAA0070 316 kpfityhneLDMNLYMRIA--------------PELYHKMLVVGGIDRVY 351 QIARCFRDE..DLRADRQPEFTQIDmEmSFmtqedVmdliEkLvsgvfke I R FR E+ DL PEFT + m+ ++ d m++ Ek++sg k mKIAA0070 352 EIGRQFRNEgiDLTHN--PEFTTCEFYMAYADYHDLMEITEKMLSGMVKS 399 vkgKRGLidLkkpGtLFPvKKENGtVSiFRmtYqEAmerYGSDKPDLRfg + g + + tY + mKIAA0070 400 ITG-------SYK-----------------ITYH---------------P 410 leLiDvsDlfkAFSHLDseFkVFsnlinaPgGrvkairvkggdaelsrks + + + ++ F+ + + ++ ++++ + mKIAA0070 411 DGPEGQAYEVD-----------FTPPFRR---ISMVEELEKA-------- 438 ikelrvlikfakeyGakGlAylkvnedaegleevkspikkfLdekklkkl l+ +k + l++ e k Ld mKIAA0070 439 ---LG-----VKLPETS----LFETEET----------RKILDDI----- 461 lertdaqeGdiLlNPfGagdLkkiVldalGGKaLRlkLgkdLgSWLvdpd +++ + ++ + + +++ l +g+ L mKIAA0070 462 --CVAKA----VE--CPPPR---TTARLLD-----KLVGEFLE-----VT 490 afsflWVvDKSGKKEKLAFPlfEkDeeEgrlvAaHHPFTmPkpedledlE +s+ + D ++ Pl + +l+ +++l ++ mKIAA0070 491 CISPTFICD----HPQIMSPLAKWHRSKEGLT---------ERFELFVMK 527 taPeealAeaYDLVlNGvElGGGSiRIhdpevQekvFe...........D + +aY + +dp Q +Fe++ + + ++++ mKIAA0070 528 KE----ICNAY-------------TELNDPVRQRQLFEeqakakaagddE 560 iLgIdpeearEkFGFLLeAfkYGaPPHgGlAlGLDRLvMLLtgtdnIRDV Id++ A++YG PP +G + G+DRL+M Lt + nI +V mKIAA0070 561 AMFIDEN--------FCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEV 602 IAFPKtaqAscLlTeAPseidekqLeelsikysevvKkk<-* FP + +++ +e + +e + mKIAA0070 603 LLFP--------------AMKPEDKKETAAT-TETPEST 626 //