hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpj/mpj03164/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0070 ( 632 res) mpj03164 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- tRNA-synt_2 tRNA synthetases class II (D, K and N) 445.0 6.3e-130 1 tRNA_anti OB-fold nucleic acid binding domain 68.5 1.5e-16 1 tRNA-synt_2b tRNA synthetase class II core domain (G, -50.4 0.19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- tRNA_anti 1/1 161 241 .. 1 85 [] 68.5 1.5e-16 tRNA-synt_2b 1/1 277 439 .. 1 228 [] -50.4 0.19 tRNA-synt_2 1/1 257 610 .. 1 384 [] 445.0 6.3e-130 Alignments of top-scoring domains: tRNA_anti: domain 1 of 1, from 161 to 241: score 68.5, E = 1.5e-16 *->VtvaGwVtsvrrsggkvafltLrDgtgGsiqvvlfk......eeaek +vaG+++++r sggk++f++Lr + ++qv++++++ +++ee+ mKIAA0070 161 LKVAGRIHAKRASGGKLIFYDLRGEG-VKLQVMANSrnykseEEFVH 206 lak.lkeGdvvrvtGkvkkrpggeqNnlkTGeKAlelvveeievl<-* + ++l++Gd+++v+G + k+++ge l+++ +ei++l mKIAA0070 207 INNkLRRGDIIGVEGNPGKTKKGE----------LSIIPQEITLL 241 tRNA-synt_2b: domain 1 of 1, from 277 to 439: score -50.4, E = 0.19 *->lGarlrralenfireelkkryGyqevdtPilepeelwerksGhwddf + ++r +++ +ir +l++ G++e++tP++ ++ + G + mKIAA0070 277 QKFIVRSKIITYIRSFLDEL-GFLEIETPMM---NIIPG--GAV--- 314 vdeekmyrfkdrggfRaDHlirkhdldElasaknkcvcGLtprFNLMFTI +++ + ++ + l mKIAA0070 315 AKP--FITYHNELD-------M--NL------------------------ 329 GPgegyLrPtaevgiarlfkneilssyrdLPlklyqigpcFRyEagsaGr y+r e + +l+ + i ++y+ig+ FR+E G mKIAA0070 330 -----YMRIAPELYHKMLVVGGID--------RVYEIGRQFRNE----GI 362 prrGlgRvR..eFtqveaeifgtp.eqHPFsseeedeellelaeeil.ka ++ +++eFt +e++ ++ + +e e++l+ +++ + + mKIAA0070 363 DL-----THnpEFTTCEFYMAYADyHD----LMEITEKMLSGMVKSItGS 403 LGl.......seepyrvvlsdrGdlggsasktgdleawlpaq<-* +++ ++++++ + y+v ++ ++++ ++e+ ++a mKIAA0070 404 YKItyhpdgpEGQAYEVDFTPP------FRRISMVEELEKAL 439 tRNA-synt_2: domain 1 of 1, from 257 to 610: score 445.0, E = 6.3e-130 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx *->seetRLkyRyLDLRrpkmqr.nlklRskiikaiRefLderGFlEVET + etR+++RyLDL+ ++ r+ +++Rskii +iR+fLde GFlE+ET mKIAA0070 257 DKETRYRQRYLDLILNDFVRqKFIVRSKIITYIRSFLDELGFLEIET 303 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx PiLtkstpEGgARdFlVpSRlhpGgskklskfya.keayLpQSPQLyKQl P++ +++++ A++F++ ++ +++++y++++P+Ly ++ mKIAA0070 304 PMMNIIPGGAVAKPFITY------------HNELdMNLYMRIAPELYHKM 341 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LmvaGfdRyFqIarcFRdEdlRadRHppEFTqlDlEmsFvdyedvmdltE L+v+G+dR+++I+r FR+E++ + +H+pEFT ++++m+++dy+d+m++tE mKIAA0070 342 LVVGGIDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYHDLMEITE 390 RF xxxxxxxxxxxx xx xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxx dlikyvfkevlg.tk.tlkekhr.elekllgielptPdFpRitYaeAmer ++++ ++k ++g++k t++ ++++ + +++++++p F+Ri++ e +e+ mKIAA0070 391 KMLSGMVKSITGsYKiTYHPDGPeGQAYEVDFTPP---FRRISMVEELEK 437 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ygsDkpPDlRfdgldeLkdvteifkgseFkv................... ++ k+P++ + ++ ++ + ++ +++ + mKIAA0070 438 ALGVKLPETSL-------------------Feteetrkilddicvakave 468 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ........gaLRlklgeeLgLieyfkdenlfnplwVvDfPlfEwdEEekr +++ + + +L+ +f + + ++p++++D+P ++ mKIAA0070 469 cppprttaR------LLD-KLVGEFLEVTCISPTFICDHPQI------MS 505 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx yvaaHHPFtmpkdedldlLekdPekalaeayDLvlnGiyEiggGSiRIhd P+++ +++ + +l+e+++L++ Ei++++++++d mKIAA0070 506 ------PLAKWHRSKE---------GLTERFELFVMK-KEICNAYTELND 539 RF xxxxxxxxxxxxxxx x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx pelQrkrFeelGldr.a.deeaeekFgflLdAlkYGaPPHGGiAlGlDRL p +Qr+ Fee+ + a+d+ea+ +++ + Al+YG+PP++G+++G+DRL mKIAA0070 540 PVRQRQLFEEQAKAKaAgDDEAMFIDENFCTALEYGLPPTAGWGMGIDRL 589 RF xxxxxxxxxxxxxxxxxxxxx vMlLtGlesIRdVIaFPktqk<-* +M+Lt++++I++V++FP +++ mKIAA0070 590 TMFLTDSNNIKEVLLFPAMKP 610 //