hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj64209/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0068 ( 1279 res) mfj64209 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FragX_IP Cytoplasmic Fragile-X interacting family 3384.6 0 1 DUF1394 Protein of unknown function (DUF1394) -167.5 0.11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1394 1/1 65 329 .. 1 313 [] -167.5 0.11 FragX_IP 1/1 27 1279 .] 1 1293 [] 3384.6 0 Alignments of top-scoring domains: DUF1394: domain 1 of 1, from 65 to 329: score -167.5, E = 0.11 *->tveiFlDFE..NAQPteeER.....EiYnqveeVLndseliLddlqs +++ FE++NA t R ++ ++ +e L ++ l mKIAA0068 65 QPNFNTNFEdrNAFVTGIARyieqaTVHSSMNEMLEEGQEYAVMLYT 111 YrGageeIReAIkn..psDpelqekAWaAVlPlVarLkrfYEfSle.LEk r + +I n++p+ e+ ek + ++P V +L f f +E mKIAA0068 112 WRSCSRAIPQVKCNeqPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNaIER 161 i...vpkLLgaLtsgpldPtqhLenqQALAKQfAeIlhFVLkFDelKMrn ++v+ L a + ++ L + fA + DelK mKIAA0068 162 FcgeVRRLCHAERRKDFVSEAYLITLGKFINMFAVL-------DELKNMK 204 PAIQNDFSYYRRtlsRmrinnkeaeinneVnnELANqGVPELPRmSLFyA + ND S Y R+ + + ++ +E N S+F+A mKIAA0068 205 CSVKNDHSAYKRA--AQFLRKMA---DPQSIQESQN--------LSMFLA 241 eaTPMLKvLSeaTdkFvsenktLPieNTTdvLsTmanVCrvMLEnpeyls + + +++ i + L+ + n C + En + mKIAA0068 242 NH--------NKITQSLQQQLE-VISGYEELLADIVNLCVDYYEN---RM 279 rfTqedtkmlClRVMVGliILyDHVHPvGAFVktSkiDmKgCirlLKLeq +T + k++ l VM L D G k D K i l K++ mKIAA0068 280 YLT-PSEKHMLLKVMGFGLYLMD-----GSVSNIYKLDAKKRINLSKIDK 323 ppessegLLNALRFTTKHLNDesTPKqIr<-* Kq++ mKIAA0068 324 YF-----------------------KQLQ 329 FragX_IP: domain 1 of 1, from 27 to 1279: score 3384.6, E = 0 *->MtakvTldDAlSNVelLdeLalPDdqPcIEarplsilYraNFDTNFE M a+vTl+DAlSNV+lL+eL+lPD+qPcIE++p+s+lY+ NF TNFE mKIAA0068 27 MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFE 73 DRnaFVTGIAkYiEeATrHaqlNdmLeEglkhAvmlYTWRcCSRAiPqaK DRnaFVTGIA+YiE+AT+H+++N+mLeEg+++AvmlYTWR+CSRAiPq+K mKIAA0068 74 DRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVK 123 sNeQPNRvEIyEktVEVLkPEVsKLlkFMyFqrkAIerFceEVkRLCHaE +NeQPNRvEIyEktVEVL+PEV+KL++FMyFqr AIerFc+EV+RLCHaE mKIAA0068 124 CNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAE 173 kRkDFVSEAYLLTLGkFINMFAVLDELKNMKaSvKNDfStyrRAaQFLka +RkDFVSEAYL TLGkFINMFAVLDELKNMK+SvKND+S+y+RAaQFL++ mKIAA0068 174 RRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRK 223 MsDtqavqesQNLSMFLAtqNkIkddlkdqletIeGYEeLLaDvVNICvh M+D+q++qesQNLSMFLA++NkI++ l++qle+I GYEeLLaD+VN Cv+ mKIAA0068 224 MADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVD 273 mYEtklYLtPeEKHMlvKVmgFgLFLMDgdaaNiaKLDqKKrislsriDk +YE+++YLtP+EKHMl+KVmgFgL+LMDg ++Ni+KLD+KKri+ls+iDk mKIAA0068 274 YYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDK 323 iFKtLeVVPLfGDMQIepfayikrSsHYeenkSKWpLsdkesispqvniv FK+L+VVPLfGDMQIe+++yik+S+HYeenkS+W+ + ++s spq+ni+ mKIAA0068 324 YFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWT-CASSSSSPQYNIC 372 eklqqIReDHvkYiselArysNevavtGsGlde.qksDsEnReitdLALr e++ qIReDH+++iselArysN+++vtGsG e qk D+E+R ++dLAL mKIAA0068 373 EQMIQIREDHMRFISELARYSNSEVVTGSGRQEaQKTDAEYRKLFDLALQ 422 GlQLLskWsaaVvEvySWKLlhPTdkkdNkeCPeeAEEYERATRYNYtse GlQLLs+Wsa+V+EvySWKL+hPTdk Nk+CP +AEEYERATRYNYt e mKIAA0068 423 GLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDNAEEYERATRYNYTTE 472 EKfALievIAMIKGLQvllgriEsvlseaiRktiYveLQdFvqltlrEPL EKfAL+evIAMIKGLQvl+gr+Esv++ aiR t+Y++LQdF q+tlrEPL mKIAA0068 473 EKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPL 522 rkAVkkKKdllaSilqsvrdtisDwekgleptdDvkGkkkspaakGdkdp r+A+kkKK+++ S+lq++r+t++Dwe g ep +D pa++G+kdp mKIAA0068 523 RQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFND-------PALRGEKDP 565 sggfdIrvPRrtvgPsSTQLYMvRTmLESLIaDKlsGgKktLRkelDgki ++gfdI+vPRr+vgPsSTQLYMvRTmLESLIaDK sG+KktLR++l g++ mKIAA0068 566 KSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADK-SGSKKTLRSSLEGPT 614 ilkIevFhkkSfywsaLlnlSdslqeccdLSQLWFREFYLEmTMGrkvnk il Ie Fh++Sf++++L+n+S++lq+ccdLSQLWFREF+LE+TMGr mKIAA0068 615 ILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR---- 660 clvrhqhneeckdlitmekRIQFPIEMSMPWILTDhILetkEPSlmEyvL RIQFPIEMSMPWILTDhILetkE S+mEyvL mKIAA0068 661 -------------------RIQFPIEMSMPWILTDHILETKEASMMEYVL 691 YpLDLYNDsAyYaltkFkKQFLYDEvEAEVNLCFDQFVYKLseqiFahYK Y LDLYNDsA YaltkF+KQFLYDE+EAEVNLCFDQFVYKL++qiFa+YK mKIAA0068 692 YSLDLYNDSAHYALTKFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYK 741 qLAgsvLLDKRFraEckrlGviirsyPsanRyEtLLkQRHVQLLGRSiDL +Ags+LLDKR r Eck+ G i P++nRyEtLLkQRHVQLLGRSiDL mKIAA0068 742 VMAGSLLLDKRLRSECKNQGATIH-LPPSNRYETLLKQRHVQLLGRSIDL 790 NrlitQRinaallKsldaAIsrFEsedltsIVELemLleiNRlcHkLLsk NrlitQR++aa++Ksl++AI rFEsedlts+VEL++LleiNR++HkLLs mKIAA0068 791 NRLITQRVSAAMYKSLELAIGRFESEDLTSVVELDGLLEINRMTHKLLSR 840 vLhsldsFDdlfkEANHnVnaPyGRITLHVFwELNYDFlpNycYNgsTnR +L +ldsFD++f+EANHnV+aPyGRITLHVFwELNYDFlpNycYNgsTnR mKIAA0068 841 YL-TLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNR 889 FvRtkvvfssrqepqReKPpqvsqyYlwGSKsLnaAysniynaYsqfvGt FvRt +f +qe qR+K p+ ++ Yl GSK Ln Ays iy++Y++fvG+ mKIAA0068 890 FVRTVLPF--SQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGP 937 pHfkaicRLLgYQGIAVvldelLKdivkrLlqgkilqyvktlievMPKvC pHf+ icRLLgYQGIAVv++elLK +vk+Llqg+ilqyvktl+evMPK+C mKIAA0068 938 PHFQVICRLLGYQGIAVVMEELLK-VVKSLLQGTILQYVKTLMEVMPKIC 986 kLPRseYGSpgvLeYYvhhLedivkYpelKtelfQsLRElGNaIvFClli +LPR+eYGSpg+Le+++h+L+div+Y+elKt fQ LRE+GNa++FClli mKIAA0068 987 RLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAVLFCLLI 1036 EqALsQEEvcDLlhAAafqnilPrpyikeaekqekklkrLEakYarlhlv Eq Ls EEvcDLlhAA+fqnilPr +ke+e+ +k+krLE kYa+lhlv mKIAA0068 1037 EQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKYAPLHLV 1086 eiiekigtddGQaaIAregdLlTkERLCCGLsiFEviLvRiksyLaaDpi ++ie++gt++ Q+aIAregdLlTkERLCCGLs+FEviL+Ri+ +L +Dpi mKIAA0068 1087 PLIERLGTPQ-QIAIAREGDLLTKERLCCGLSMFEVILTRIRTFL-DDPI 1134 WtGppPtNGvihvDECvEfhRlwSALQFvyCiPvrddnEvtaEelFGdgL W+Gp P NGv+hvDECvEfhRlwSA+QFvyCiPv+ + E+t+E++FGdgL mKIAA0068 1135 WRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVG-THEFTVEQCFGDGL 1183 nWaGctlIvLLGQqRRFevLDFCYHllrVqraDGKDEvikgirLkkMvdR WaGc +IvLLGQqRRF vLDFCYHll+Vq+ DGKDE+ik+++LkkMv+R mKIAA0068 1184 HWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVER 1233 IRrFQvLNnqiFiILnkyLkeneddsstVEhVRcFaPPvHpslassa<-* IR+FQ+LN +i IL+kyLk+++++s VEhVRcF+PP+H+slass mKIAA0068 1234 IRKFQILNDEIITILDKYLKSGDGESTPVEHVRCFQPPIHQSLASS- 1279 //