hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03270/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0064  ( 502 res)   mpj03270

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PhoX homologous domain, present in p47phox a    95.6    5.8e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PX         1/1      33   137 ..     1   142 []    95.6  5.8e-24

Alignments of top-scoring domains:
PX: domain 1 of 1, from 33 to 137: score 95.6, E = 5.8e-24
                   *->dniai.vavveeetsgkkrgdgkhyyyvieietstnedveewtvyRR
                      ++++i+ ++++  +s      g ++y++++i++++ +     +++ R
   mKIAA0064    33    MHFSIpETESRSGDS------GGSAYVAYNIHVNGVL-----HCRVR 68   

                   YsdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkks
                   Ys+ l Lh++L+k+++      ++P +P+kkl++ +              
   mKIAA0064    69 YSQLLGLHEQLRKEYG----ANVVPAFPPKKLFSLT-------------- 100  

                   lnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                        ++ +e+Rr++Le+Y+q++ ++P+l +    se + +FL      
   mKIAA0064   101 -----PAEVEQRREQLEKYMQAVRQDPLLGS----SETFNSFLRRA    137  

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