hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03270/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0064  ( 502 res)   mpj03270

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PX domain                                       97.1    3.6e-25   1
RA       Ras association (RalGDS/AF-6) domain             7.9       0.98   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PX         1/1      33   137 ..     1   133 []    97.1  3.6e-25
RA         1/1     147   238 ..     1    98 []     7.9     0.98

Alignments of top-scoring domains:
PX: domain 1 of 1, from 33 to 137: score 97.1, E = 3.6e-25
                   *->dsili.vvvvdpetsrkkegskkhtyyvyeittktnkewsVkRRYsd
                      ++++i+ +++++  s      ++ +y++y+i++++    +++ RYs+
   mKIAA0064    33    MHFSIpETESRSGDS------GGSAYVAYNIHVNG--VLHCRVRYSQ 71   

                   FeeLhekLlrkfpalgrilPplPpKklfgryrkeslemtsvkhssnnfde
                    + Lhe+L+++++  + ++P +PpKklf+                  + +
   mKIAA0064    72 LLGLHEQLRKEYG--ANVVPAFPPKKLFS------------------LTP 101  

                   efiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   + +e+Rr++Le+y+q + q+P+l + se + +FL      
   mKIAA0064   102 AEVEQRREQLEKYMQAVRQDPLLGS-SETFNSFLRRA    137  

RA: domain 1 of 1, from 147 to 238: score 7.9, E = 0.98
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                       +  l V + +g+    + + v  ++ +e+V++a++ K+ l++d  +
   mKIAA0064   147    EEVSLEVLLSNGQ---KVLVTVLTSDQTEDVLEAVAAKLDLPDDLIG 190  

                   dyvLvEvslvlerggeer.....rvLpddEkPlqiqlqlkrdaqvrsrFl
                   +++L     +l+r+ e+   +  r+L + E P+  +  l+++    + ++
   mKIAA0064   191 YFSL-----FLVREKEDGafsfvRKLQEFELPYVSVTSLRSQ---EYKIV 232  

                   Lrrred<-*
                   Lr+      
   mKIAA0064   233 LRKSYW    238  

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