hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02903/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0063  ( 212 res)   mbh02903

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Josephin Josephin                                        67.8    2.3e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Josephin   1/1      35   209 ..     1   205 []    67.8  2.3e-16

Alignments of top-scoring domains:
Josephin: domain 1 of 1, from 35 to 209: score 67.8, E = 2.3e-16
                   *->iesIFhErQelqLCaqHcLNnLLQDkdfktkellnlaaqldetedqr
                         I+hE+Q+  LCa+H+LNn +QD  ++t+e l  + q +  + + 
   mKIAA0063    35    --QIYHEKQRRELCALHALNNVFQDSNAFTRETLQEIFQRLSPNTMV 79   

                   leeatptSevlrpflntisgNmdesgffsiqvlkkalkvwslkligiesp
                           +          gN+d+++ + ++  k+   vw +k+  +  +
   mKIAA0063    80 TPHKKSMLG---------NGNYDVNVIMAALQTKGYEAVWWDKRRDVGVI 120  

                   dlddADTLkgdpLnvrvficnG...LWrke.HWfvvRKlgkqWFnLnSvl
                   +l      +g  +n ++  c G+ +L +k++HW+ vR  g+  +nL+S l
   mKIAA0063   121 ALTN---VMGFIMNLPSSLCWGplkLPLKRqHWICVREVGGAYYNLDSKL 167  

                   vgPkLlsDDtyvrlFLdQvlsEgysIfvvkgllpnaeaddLlslirVvit
                     P+ +    ++r FL   l              n+e      l  Vv+ 
   mKIAA0063   168 KMPEWIGGESELRKFLKYHLR-----------GKNCE------LLLVVP- 199  

                   HrpkLiGkksak<-*
                       +   +s +   
   mKIAA0063   200 --EEVEAHQSWR    209  

//