hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04536/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0062  ( 326 res)   mbh04536

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Zip      ZIP Zinc transporter                           145.8    7.5e-40   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Zip        1/1     107   317 ..     1   381 []   145.8  7.5e-40

Alignments of top-scoring domains:
Zip: domain 1 of 1, from 107 to 317: score 145.8, E = 7.5e-40
                   *->lllkiyaifalliisllggllplllplikstttendlrrsskllsfl
                       +++ y+++ +++isl++++++ ++p +k+         +++ll+++
   mKIAA0062   107    IEVWGYGFLCVTVISLCSLMGASVVPFMKK-------TFYKRLLLYF 146  

                   laFAaGvlLgtaflHLLPealealghkhshhhhhesseeledspsgefpf
                    a+A+G+l + a++ L+Pe ++ l                          
   mKIAA0062   147 IALAIGTLYSNALFQLIPEDIGTL-------------------------- 170  

                   agllvllGfllfllvEklltllkgepcveskggghghshgeelssaetge
                                                                     
   mKIAA0062     - -------------------------------------------------- -    

                   spessheeaaedvealesevesskekhedshelehvldksksteeeskdk
                                                                     
   mKIAA0062     - -------------------------------------------------- -    

                   nahghchHghhvsnvrsvqlryrliawllllglilHnffdGLAiGasfss
                                            aw+++l+++lHnf+dGLAiGasf++
   mKIAA0062   171 -------------------------AWMITLSDGLHNFIDGLAIGASFTV 195  

                   stilGislfiAvlfHelphglGlgaiLlqagfsrkkAvPwllqllfaltt
                   s   Gis+++A+l+ e+ph+lG+++iLl ag+s  +A+    ++l+a+ +
   mKIAA0062   196 SVFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQAL--FFNFLSACCC 243  

                   piGiaiGigisrtsydsnspgadivsgillafsAGtflYvAlvellPeel
                   ++G+a+Gi+           g+ ++  +++a+++G+flY+Al ++ Pe+ 
   mKIAA0062   244 YLGLAFGILA----------GSHFSANWIFALAGGMFLYIALADMFPEMN 283  

                   asseenetgssslkl.sllqllalllGfalMalia<-*
                   +  +e+e +++s+  ++ +q+l+ll+Gf +M+++    
   mKIAA0062   284 EVCQEDE-KNDSFLVpFVIQNLGLLTGFSIMLVLT    317  

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