hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB Sequence file: /cdna4/rodent/full/goal/mnh/mnh02088/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0060 ( 274 res) mnh02088 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- nagB nagB: glucosamine-6-phosphate isomerase 492.2 4e-144 1 pgl pgl: 6-phosphogluconolactonase -33.0 0.00012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- pgl 1/1 1 232 [. 1 251 [] -33.0 0.00012 nagB 1/1 1 244 [. 1 260 [] 492.2 4e-144 Alignments of top-scoring domains: pgl: domain 1 of 1, from 1 to 232: score -33.0, E = 0.00012 *->VfsnsaelaealaeriatklqkALa.ergqallaLSGGrsPiaLlea +a+ i+ ++ + ++l+L G++P + +++ mKIAA0060 1 -----------AAKYIRNRIIQFNPgPDKYFTLGLPTGSTPLGCYQK 36 Laaqeags.kldWsrihlflgDERyV..PldhadSNtglareaLLdrvai L + + ++l+ + f DE yV+ P dh++S +++++i mKIAA0060 37 LIEY-YKNgDLSFQYVKTFNMDE-YVglPRDHPESYHSFMWNNFFKHIDI 84 pasnihpmptelselgadieeaAelYeqeLaaafqpeagsfPvFDLllLG ++n h ++ + ad+ + + ++e +++aa e L + G mKIAA0060 85 HPENTHILDGNA----ADLQAECDAFEEKIQAAGGIE--------LFVGG 122 MGpDGHTA......SLFPGEthtpalqetergsatlvtvlt....kspkP GpDGH+A +++++SL t + +++ t+++ + +++ k+ mKIAA0060 123 IGPDGHIAfnepgsSLVS---RTRVKTLAMD---TILANARffdgDLAKV 166 PheRiTLTlpalnaArkVllliaGeeKravlaealaveaeplslPaagvl P +T + +A++V li+G+ K+ +l +a + e + + +++++ mKIAA0060 167 PTMALTVGVGTVMDAKEVMILITGAHKAFALYKAIE-EGVNHMWTVSAFQ 215 PhsgkllWlldyaAarkL<-* +++++ d++A + L mKIAA0060 216 -QHPRTVFVCDEDATLEL 232 nagB: domain 1 of 1, from 1 to 244: score 492.2, E = 4e-144 *->MrliilqTyEelskwAArhianrIneFKPtaarPFVLGLpTGgTPvg AA+ i nrI F P ++ F LGLpTG+TP+g mKIAA0060 1 ---------------AAKYIRNRIIQFNPGPDKYFTLGLPTGSTPLG 32 tYkqLIrlyqagkiSFqnVvTFNlDEYvGLseeHPeSYhsFMhnnFFqHI Y+ LI+ y++g +SFq V TFN+DEYvGL+ +HPeSYhsFM+nnFF HI mKIAA0060 33 CYQKLIEYYKNGDLSFQYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHI 82 DikpenInIlNGNaddleAECrrYEekIkSyGgIdlflgGIGadGHIaFN Di pen +Il GNa dl AEC EekI +GgI lf+gGIG+dGHIaFN mKIAA0060 83 DIHPENTHILDGNAADLQAECDAFEEKIQAAGGIELFVGGIGPDGHIAFN 132 EPGSSleSRTRikTLtedTiiANsRFFegDvnqVPKyALTvGIgTiLdFS EPGSSl SRTR+kTL dTi AN+RFF+gD +VP ALTvG+gT++d + mKIAA0060 133 EPGSSLVSRTRVKTLAMDTILANARFFDGDLAKVPTMALTVGVGTVMD-A 181 kevllLvsGhqKAeAvqkavEGnvnhdwtiSaLQlHkhvivvcDeeAaqe kev++L++G KA A+ ka+E +vnh+wt+Sa Q H+ + vcDe A+ e mKIAA0060 182 KEVMILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLE 231 LKvkTveYFnelE<-* LKvkTv+YF l mKIAA0060 232 LKVKTVKYFKGLM 244 //