hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06726/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0059  ( 670 res)   mbg06726

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LIM      Zinc-binding domain present in Lin-11, Isl-1   207.1    1.6e-57   4
VHP      Villin headpiece domain                         73.8    2.2e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LIM        1/4      38    89 ..     1    52 []    46.7  3.1e-09
LIM        2/4      97   149 ..     1    52 []    56.4  3.7e-12
LIM        3/4     165   216 ..     1    52 []    73.3    3e-17
LIM        4/4     224   276 ..     1    52 []    54.3  1.5e-11
VHP        1/1     635   670 .]     1    36 []    73.8  2.2e-17

Alignments of top-scoring domains:
LIM: domain 1 of 4, from 38 to 89: score 46.7, E = 3.1e-09
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk
                      +C++Cg+p  g evlr+  k++H +CF+C +C++ L+ ++ff k+g 
   mKIAA0059    38    HCHKCGEPCKG-EVLRVQTKHFHIKCFTCKVCGCDLAQgGFFIKNGD 83   

                   lyCkdc<-*
                    +C  +   
   mKIAA0059    84 YLCTLD    89   

LIM: domain 2 of 4, from 97 to 149: score 56.4, E = 3.7e-12
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      +C+gCg++++g ev++algk++Hp+CF C++Ck+p+ ++++  + + 
   mKIAA0059    97    RCHGCGEFVEG-EVVTALGKTYHPNCFACTICKRPFPPgdRVTFNGR 142  

                   klyCkdc<-*
                     +C+ c   
   mKIAA0059   143 DCLCQLC    149  

LIM: domain 3 of 4, from 165 to 216: score 73.3, E = 3e-17
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl
                       CagCg+ I   + l al+k wH  CFkC  C+k L+g++++kdg++
   mKIAA0059   165    NCAGCGRDIKNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGSP 211  

                   yCkdc<-*
                   yC+++   
   mKIAA0059   212 YCEKD    216  

LIM: domain 4 of 4, from 224 to 276: score 54.3, E = 1.5e-11
                   *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg
                      kC +C+++Itg +vl+a++k++Hp+C +Cs+C++ ++++++ + ++ 
   mKIAA0059   224    KCEACHQFITG-KVLEAGDKHYHPSCARCSRCNQMFTEgeEMYLQGS 269  

                   klyCkdc<-*
                   ++  +dc   
   mKIAA0059   270 TVWHPDC    276  

VHP: domain 1 of 1, from 635 to 670: score 73.8, E = 2.2e-17
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +L +e F e+FgM+++EF+kLPlW++n++KKk++LF   
   mKIAA0059   635    HLAPEVFWEIFGMSIQEFDKLPLWRRNDMKKKAKLF    670  

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