hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06726/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0059  ( 670 res)   mbg06726

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LIM      LIM domain                                     184.6    1.6e-51   4
VHP      Villin headpiece domain                         73.8    3.7e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LIM        1/4      39    95 ..     1    62 []    49.4  7.7e-11
LIM        2/4      98   154 ..     1    62 []    51.6  1.8e-11
LIM        3/4     166   222 ..     1    62 []    72.5  9.1e-18
LIM        4/4     225   281 ..     1    62 []    34.7  2.2e-06
VHP        1/1     635   670 .]     1    36 []    73.8  3.7e-18

Alignments of top-scoring domains:
LIM: domain 1 of 4, from 39 to 95: score 49.4, E = 7.7e-11
                   *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg
                      C++Cg+p+   ev+ r++ k++H++CF+C vCg+ L++g+ f++k+g
   mKIAA0059    39    CHKCGEPC-KGEVL-RVQTKHFHIKCFTCKVCGCDLAQGG-FFIKNG 82   

                   skelYCkkDYyklfg<-*
                       +C  DY++++g   
   mKIAA0059    83 -D-YLCTLDYQRMYG    95   

LIM: domain 2 of 4, from 98 to 154: score 51.6, E = 1.8e-11
                   *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg
                      C+gCg+ +++ +v+  Al+k++Hp+CF C++C++p+ +gd+  +   
   mKIAA0059    98    CHGCGEFVEGEVVT--ALGKTYHPNCFACTICKRPFPPGDRVTFNGR 142  

                   skelYCkkDYyklfg<-*
                       +C+  + + ++   
   mKIAA0059   143 -D-CLCQL-CAQPMS    154  

LIM: domain 3 of 4, from 166 to 222: score 72.5, E = 9.1e-18
                   *->CagCgkpIy.drevvmrAlnkvwHpeCFrCavCgkpLtegdefyekd
                      CagCg+ I +++ ++  Al+k wH+ CF+C  Cgk Lt    + +kd
   mKIAA0059   166    CAGCGRDIKnGQALL--ALDKQWHLGCFKCKSCGKVLTGE--YISKD 208  

                   gskelYCkkDYyklfg<-*
                   g   +YC+kDY+ lfg   
   mKIAA0059   209 G-S-PYCEKDYQGLFG    222  

LIM: domain 4 of 4, from 225 to 281: score 34.7, E = 2.2e-06
                   *->CagCgkpIydrevvmrAlnkvwHpeCFrCavCgkpLtegdefyekdg
                      C +C++ I++ ++   A++k++Hp+C rC+ C++ +teg e y+   
   mKIAA0059   225    CEACHQFITGKVLE--AGDKHYHPSCARCSRCNQMFTEGEEMYLQGS 269  

                   skelYCkkDYyklfg<-*
                       + ++D+ +  +   
   mKIAA0059   270 ---TVWHPDCKQSTK    281  

VHP: domain 1 of 1, from 635 to 670: score 73.8, E = 3.7e-18
                   *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-*
                      +L +e F e+FgM+++EF+kLPlW++n++KKk++LF   
   mKIAA0059   635    HLAPEVFWEIFGMSIQEFDKLPLWRRNDMKKKAKLF    670  

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