hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbh/mbh03469/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0055 ( 1108 res) mbh03469 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RHOD Rhodanese Homology Domain 39.1 6.1e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RHOD 1/1 213 338 .. 1 94 [] 39.1 6.1e-07 Alignments of top-scoring domains: RHOD: domain 1 of 1, from 213 to 338: score 39.1, E = 6.1e-07 *->v.leelkllln.edvvllDvRspeEyeggHIpGAvniplselldr.. +++++ ++++++ +++ D+R ++y+ + I ++ +p ++++ + mKIAA0055 213 AkELYTMMMDKnTSLIIMDARKIQDYQHSCILDSLSVPEEAISPGvt 259 ................lgldkdkpvivyC..rsGvrs.aakaawlLrelG + + + +++++++ ++++ ++v++++ s + ++ + L+ + mKIAA0055 260 aswieanlsddskdtwKKRGSVDYVVLLDwfSSAKDLlLGTTLRSLKDAL 309 fk.........nVylLdGGykeWsaagpp<-* fk ++++ +++ +L+GGy+ W+ ++p+ mKIAA0055 310 FKwesktvlrhEPLVLEGGYENWLLCYPQ 338 //