hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg06166/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0054 ( 1617 res) mbg06166 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ZnF_C3H1 zinc finger 29.2 0.00056 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ZnF_C3H1 1/1 179 206 .. 1 31 [] 29.2 0.00056 Alignments of top-scoring domains: ZnF_C3H1: domain 1 of 1, from 179 to 206: score 29.2, E = 0.00056 *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-* ++ +lCk+F ++G C+yG++C aH+ mKIAA0054 179 SEEYTLCKRFLEQG---ICRYGAQCTSAHSQ 206 //