hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01121/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0052  ( 744 res)   mpg01121

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HELICc   helicase superfamily c-terminal domain          78.8    6.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HELICc     1/1     163   252 ..     1    86 []    78.8  6.8e-19

Alignments of top-scoring domains:
HELICc: domain 1 of 1, from 163 to 252: score 78.8, E = 6.8e-19
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                       ++++ L  l    + +++++HGgl +  +e i+  F +g ik L+a
   mKIAA0052   163    PQVEHVLPLL----KRGIGIHHGGLLPILKETIEILFSEGLIKALFA 205  

                   TdvaerGlDipgvdlVInydl.........pwspasyiQRiGRaGRaG<-
                   T ++++G+++p +++V + ++++ ++++ +++s  +yiQ++GRaGR G  
   mKIAA0052   206 TETFAMGINMP-ARTVLFTNArkydgkdfrWISSGEYIQMSGRAGRRG   252  

                   *
                    
   mKIAA0052     -   -    

//