hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg01121/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0052 ( 744 res) mpg01121 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HELICc helicase superfamily c-terminal domain 78.8 6.8e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- HELICc 1/1 163 252 .. 1 86 [] 78.8 6.8e-19 Alignments of top-scoring domains: HELICc: domain 1 of 1, from 163 to 252: score 78.8, E = 6.8e-19 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva ++++ L l + +++++HGgl + +e i+ F +g ik L+a mKIAA0052 163 PQVEHVLPLL----KRGIGIHHGGLLPILKETIEILFSEGLIKALFA 205 TdvaerGlDipgvdlVInydl.........pwspasyiQRiGRaGRaG<- T ++++G+++p +++V + ++++ ++++ +++s +yiQ++GRaGR G mKIAA0052 206 TETFAMGINMP-ARTVLFTNArkydgkdfrWISSGEYIQMSGRAGRRG 252 * mKIAA0052 - - //