hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg01121/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0052  ( 744 res)   mpg01121

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DSHCT      DSHCT (NUC185) domain                        399.1   4.1e-116   1
Helicase_C Helicase conserved C-terminal domain          51.8    1.5e-11   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Helicase_C   1/1     168   252 ..     1    76 []    51.8  1.5e-11
DSHCT        1/1     556   744 .]     1   197 []   399.1 4.1e-116

Alignments of top-scoring domains:
Helicase_C: domain 1 of 1, from 168 to 252: score 51.8, E = 1.5e-11
                   *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD
                       l++++  ++ +hGgl +  +e i+  F +g +k L+aT  +a+G++
   mKIAA0052   168    VLpLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGIN 214  

                   ipdvnlVInydl.........pwnpesyiQRiGRaGRaG<-*
                    p+ ++V + ++++ ++++ ++ +  +yiQ+ GRaGR G   
   mKIAA0052   215 MPA-RTVLFTNArkydgkdfrWISSGEYIQMSGRAGRRG    252  

DSHCT: domain 1 of 1, from 556 to 744: score 399.1, E = 4.1e-116
                   *->RlrVLkrLGyiDdddvVtlKGRvACEIssgdELllTElifsgffndL
                      R+rVL+rLG+ ++ dv+++KGRvACEIss dELllTE++f+g fndL
   mKIAA0052   556    RKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL 602  

                   ePeeiAALLScfVfeektgDlwcneeeppkltpeLeealkrlqeiarkva
                   + e++ ALLScfVf+e+++     e+  pklt++L+ +l+++qe+a+++a
   mKIAA0052   603 SSEQATALLSCFVFQENSS-----EM--PKLTEQLAGPLRQMQECAKRIA 645  

                   kvqeeckvpevdeeeyveslrfgLMeVVYeWArGasFaeIcemTdvdEGs
                   kv+ e k+ e+dee y++s++++LM+VVY WA Ga+Fa Ic+mTdv+EGs
   mKIAA0052   646 KVSAEAKL-EIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGS 694  

                   IVRtirRLdEllrqvrnAAriIGnssLeeKmeeAselIkRDIVFaASLYL
                   I+R++rRL+Ellrq+++AA++IGn++Le+K++e + +IkRDIVFaASLYL
   mKIAA0052   695 IIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 744  

                   <-*
                      
   mKIAA0052     -     -    

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