hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpf/mpf00519/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0051 ( 1681 res) mpf00519 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RasGAP GTPase-activator protein for Ras-like GTPa 412.9 3e-120 1 RasGAP_C RasGAP C-terminus 214.6 1.5e-60 1 IQ IQ calmodulin-binding motif 94.9 1.6e-24 4 CH Calponin homology (CH) domain 67.7 2.4e-16 1 WW WW domain 23.5 0.005 1 bZIP_1 bZIP transcription factor 8.5 0.12 1 Baculo_p24 Baculovirus P24 capsid protein -83.9 0.7 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CH 1/1 70 184 .. 1 121 [] 67.7 2.4e-16 Baculo_p24 1/1 294 440 .. 1 225 [] -83.9 0.7 WW 1/1 705 734 .. 1 30 [] 23.5 0.005 IQ 1/4 770 790 .. 1 21 [] 27.9 0.00023 IQ 2/4 800 820 .. 1 21 [] 28.6 0.00015 IQ 3/4 830 850 .. 1 21 [] 26.6 0.00057 IQ 4/4 860 880 .. 1 21 [] 18.6 0.15 RasGAP 1/1 1049 1262 .. 1 231 [] 412.9 3e-120 bZIP_1 1/1 1503 1564 .. 1 65 [] 8.5 0.12 RasGAP_C 1/1 1475 1607 .. 1 149 [] 214.6 1.5e-60 Alignments of top-scoring domains: CH: domain 1 of 1, from 70 to 184: score 67.7, E = 2.4e-16 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL +e rW++++l+++++ + t++++ ++ +G+ L++L mKIAA0051 70 HLEEAKRWMEACLGEDLP----------PTTELEEGLR-NGVYLAKL 105 lnklrPglidkkkv.........pslsrfdkleNlnlaldaaekeGlgii n ++P+ + +kk+ ++++++ + + f++++N+ + l+a++++Gl++ mKIAA0051 106 GNFFSPKVVSLKKIydreqtrykATGLHFRHTDNVIQWLNAMDEIGLPK- 154 lvlidpeDivegnpdPDeklvltllwqLirrfq<-* +++ ++ Di+++++ + + ++++L ++ mKIAA0051 155 IFYPETTDIYDRKN---MPRCIYCIHALSLYLF 184 Baculo_p24: domain 1 of 1, from 294 to 440: score -83.9, E = 0.7 *->FqYnPdnslEVvIitNaedDrDGYlELtAAAqLLAPfvkIRGFntsa ++n n E N++ rD Y EL A + + k+ nts mKIAA0051 294 -MTNAKNRTE-----NSDRERDVYEELLTQAEIQGNVNKV---NTSS 331 lwLWtnaasShKLtrNnKNYvHvFvLfKYLsnYnlsnk..pahppEYytL + a+ S L + L K L++ l ++ +++ + y+ mKIAA0051 332 ----ALANISLALEQGC-----AVTLLKALQSLALGLRglQTQNSDWYM- 371 KqlvcDLlvGaQsqivDPLceiKtQLCaiqEsLneavvtlNshaiydndt Kql +DL Qs DPL +E + +v+ Ns a mKIAA0051 372 KQLQSDLQQKRQSGQTDPLQ---------KEEVQAGVDAANSAA------ 406 taqglkelssndaaannpidqieklREllRsehesLygnisalLdviksl + R l + + mKIAA0051 407 ---------------------QQYQRRL----------------AAVAAI 419 qieytkKitFstDTiLDglKsIKDlVclnK<-* + k i+ K +l+++ mKIAA0051 420 NAAIQKGIAE---------KTVLELMNPEA 440 WW: domain 1 of 1, from 705 to 734: score 23.5, E = 0.005 *->LppgWeerkdpdGrpYYyNhnTktTqWekP<-* ++ W++++ G+ YY+N +T+ W P mKIAA0051 705 NNSKWVKHWVKGGYHYYHNLETQAGGWAEP 734 IQ: domain 1 of 4, from 770 to 790: score 27.9, E = 0.00023 *->rraaikIQaawRGylaRkryk<-* + ++k+Qa++RGyl+R++++ mKIAA0051 770 EGLITKLQACCRGYLVRQEFR 790 IQ: domain 2 of 4, from 800 to 820: score 28.6, E = 0.00015 *->rraaikIQaawRGylaRkryk<-* a+++IQ++wRGy+++k+y+ mKIAA0051 800 IPAITCIQSQWRGYKQKKAYQ 820 IQ: domain 3 of 4, from 830 to 850: score 26.6, E = 0.00057 *->rraaikIQaawRGylaRkryk<-* ++ ++kIQ+ R+++aRkry+ mKIAA0051 830 KDEVVKIQSLARMHQARKRYR 850 IQ: domain 4 of 4, from 860 to 880: score 18.6, E = 0.15 *->rraaikIQaawRGylaRkryk<-* +ikIQa++R+ +aR yk mKIAA0051 860 INDIIKIQAFIRANKARDDYK 880 RasGAP: domain 1 of 1, from 1049 to 1262: score 412.9, E = 3e-120 *->LvktllqkEIeSkaddpttlfRgNslaskmleqyfRrarGneYLrkt L++t+lq+EI+Sk+d+++++++gN++++km+++++R+arG+++Lr++ mKIAA0051 1049 LFQTALQEEIKSKVDQIQEIVTGNPTVIKMVVSFNRGARGQNALRQI 1095 LrpvLkeIieskdWqHLscEiDPlkvykklVNqgelstsE...ldydlTn L+pv+keI+++k+ L++++DP+++yk++VNq+e++t+E ++l+yd+T+ mKIAA0051 1096 LAPVVKEIMDDKS---LNIKTDPVDIYKSWVNQMESQTGEaskLPYDVTP 1142 EevldeeekseaieenlrnLlkyteklleaItsSsdefPpeLryIckclr E++l +ee++++++ ++rn++++t+k+l+aI+sS+d++P+++r+I+k+l+ mKIAA0051 1143 EQALSHEEVKTRLDNSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLK 1192 qsacekFPdnatVKEKKENKKSVVSqRFeqvilsavGgfvFLRFinPAIv +s++ekFPd++ e+++l+++G+++++R++nPAIv mKIAA0051 1193 DSLHEKFPDAG-----------------EDELLKIIGNLLYYRYMNPAIV 1225 sPdlfnIidkspsaqaTTDqrRtLtliAKviQslANg<-* +Pd+f+Iid+s+++q+TTDqrR+L++iAK++Q++A++ mKIAA0051 1226 APDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASN 1262 bZIP_1: domain 1 of 1, from 1503 to 1564: score 8.5, E = 0.12 *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk ++ + + ++N +rr+R+R++ae+ +L++ +L ++ + + + mKIAA0051 1503 QELINDIAKDIRN---QRRYRQRRKAELVKLQQTYSALNSKATFYGE 1546 elerLkkevakLksenee<-* ++ +k ++ ++ + + mKIAA0051 1547 QVDYYKSYIKTCLDNLAS 1564 RasGAP_C: domain 1 of 1, from 1475 to 1607: score 214.6, E = 1.5e-60 *->sLkelkekilknlkeLEelGlvqseVkNkYqsfindIAldirNlrri sL+e+keki+++lk+L+elG+v+++ N+Yq++indIA+dirN+rr+ mKIAA0051 1475 SLQEKKEKIQTGLKKLTELGTVDPK--NRYQELINDIAKDIRNQRRY 1519 reqrkaEldalqqtlraLrekreyLdeqlarYgeYLktcletlqrAKDfk r++rkaEl++lqqt+ aL++k+++++eq+++Y++Y+ktcl++l++ mKIAA0051 1520 RQRRKAELVKLQQTYSALNSKATFYGEQVDYYKSYIKTCLDNLAS----- 1564 tkkkskfkskkkevkkvrkekgskkksksvKysakkLhkkGVlleitgpq k+k++kk+r++kg+k+k++s+Ky+a++Lh+kGVllei+++q mKIAA0051 1565 ---------KGKVSKKPREMKGKKSKKISLKYTAARLHEKGVLLEIEDLQ 1605 ln<-* n mKIAA0051 1606 AN 1607 //