hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnj/mnj11353/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0050  ( 158 res)   mnj11353

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Ank      Ankyrin repeat                                  46.1    7.8e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/2      24    56 ..     1    33 []    23.0    0.007
Ank        2/2      57    89 ..     1    33 []    26.1  0.00082

Alignments of top-scoring domains:
Ank: domain 1 of 2, from 24 to 56: score 23.0, E = 0.007
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                         TPL  A   ++l  +++Ll++GA++n  d    
   mKIAA0050    24    GNATPLIRATAANSLLACEFLLQNGANVNQADS    56   

Ank: domain 2 of 2, from 57 to 89: score 26.1, E = 0.00082
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ PLH+A + g++ ++ l+l++GAdl a+d    
   mKIAA0050    57    AGRGPLHHATILGHTGLACLFLKRGADLGARDT    89   

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