hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid07066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0048  ( 622 res)   mid07066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     60.9    1.6e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/3     534   558 ..     1    23 []    24.8    0.012
ZnF_C2H2   2/3     564   588 ..     1    23 []    27.5   0.0019
ZnF_C2H2   3/3     594   616 ..     1    23 []    22.1    0.077

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 3, from 534 to 558: score 24.8, E = 0.012
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C+i++Cgk+f+  + L+ H+r H   
   mKIAA0048   534    HVCHIpDCGKTFRKTsLLRAHVRLH    558  

ZnF_C2H2: domain 2 of 3, from 564 to 588: score 27.5, E = 0.0019
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++C++  Cgk+f++ ++L+rH r+H   
   mKIAA0048   564    FVCNWfFCGKRFTRSdELQRHARTH    588  

ZnF_C2H2: domain 3 of 3, from 594 to 616: score 22.1, E = 0.077
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C+k+f + ++L++H+++H   
   mKIAA0048   594    FECAQ-CQKRFMRSdHLTKHYKTH    616  

//