hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid07066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0048  ( 622 res)   mid07066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          84.6      2e-21   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/3     534   558 ..     1    24 []    32.6  9.3e-06
zf-C2H2    2/3     564   588 ..     1    24 []    38.0  2.2e-07
zf-C2H2    3/3     594   616 ..     1    24 []    28.2  0.00019

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 3, from 534 to 558: score 32.6, E = 9.3e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+++dCgk+F+  s L++H r H   
   mKIAA0048   534    HVCHIpDCGKTFRKTSLLRAHVRLH    558  

zf-C2H2: domain 2 of 3, from 564 to 588: score 38.0, E = 2.2e-07
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C++  Cgk+F+r+++L+rH rtH   
   mKIAA0048   564    FVCNWfFCGKRFTRSDELQRHARTH    588  

zf-C2H2: domain 3 of 3, from 594 to 616: score 28.2, E = 0.00019
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C  +C+k+F r+++L++H +tH   
   mKIAA0048   594    FECA-QCQKRFMRSDHLTKHYKTH    616  

//