hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mkg/mkg00303/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0046  ( 696 res)   mkg00303

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CBS      Domain in cystathionine beta-synthase and ot    79.3    4.6e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CBS        1/2     435   484 ..     1    47 []    26.2   0.0044
CBS        2/2     637   685 ..     1    47 []    53.1  3.7e-11

Alignments of top-scoring domains:
CBS: domain 1 of 2, from 435 to 484: score 26.2, E = 0.0044
                   *->dvvtvspdttleealelmrehgirrlPVVd...gkLvGIvtrrDilk
                      ++++v+p+t+++  ++++r++ ++++PVV +++g+ + +    ++++
   mKIAA0046   435    NLTYVYPHTRIQSLVSILRTTVHHAFPVVTenrGNEKEFMKGNQLIS 481  

                   ala<-*
                   +     
   mKIAA0046   482 NNI    484  

CBS: domain 2 of 2, from 637 to 685: score 53.1, E = 3.7e-11
                   *->dvvtvspdttleealelmrehgirrlPVVd..gkLvGIvtrrDilka
                       ++tvsp+t +  +++l+r+ g+r+lPVV+  g++vGI+tr  + + 
   mKIAA0046   637    SPFTVSPNTHVSQVFNLFRTMGLRHLPVVNavGEIVGIITRHNLTNE 683  

                   la<-*
                   ++   
   mKIAA0046   684 FL    685  

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