hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00150/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0044  ( 458 res)   mbj00150

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B56      Protein phosphatase 2A regulatory B subunit    923.5   5.9e-274   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B56        1/1     100   458 .]     1   412 []   923.5 5.9e-274

Alignments of top-scoring domains:
B56: domain 1 of 1, from 100 to 458: score 923.5, E = 5.9e-274
                   *->pLPsfkDvpasEkeeLfikKLeqCcvvFDFt.DPlkdlkeKEiKRqt
                      +LPs+kDvp   +e Lfi+KL+qCcv+FDF++DPl+dlk KE+KR++
   mKIAA0044   100    KLPSLKDVPPADQEKLFIQKLRQCCVLFDFVsDPLSDLKWKEVKRAA 146  

                   LlELvDyvtssrgkltEavypeivkMvsvNlFRtLpPssnenkeefDpeE
                   L E+v+y+t++r ++tE++ype+v+M++vN FRtLpPssn++++efDpeE
   mKIAA0044   147 LSEMVEYITHNRNVITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEE 196  

                   DEPtLEpAWPHLQlVYELFLRFleSPdfdakvAKrYiDqkFvlrLLdLFD
                   DEPtLE+AWPHLQlVYE+FLRFleSPdf++++AK+YiDqkFvl+LL+LFD
   mKIAA0044   197 DEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFD 246  

                   SEDPRERdfLKTiLHRIYGKFLvlRaFIRKqiNNIFyrFiYEtEkhNGIA
                   SEDPRERdfLKT+LHRIYGKFL+lRa+IRKqiNNIFyrFiYEtE+hNGIA
   mKIAA0044   247 SEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIA 296  

                   ELLEILGSIINGFALPLKeEHKiFLvRVLiPLHkpKslslYHqQLaYCiV
                   ELLEILGSIINGFALPLKeEHKiFL++VL+PLHk+Ksls+YH+QLaYC+V
   mKIAA0044   297 ELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVV 346  

                   QFvEKDpkLtetVIrGLLKyWPktnSqKEVmFLgElEEILeviePaEFqK
                   QF+EKD++Lte+V+ +LLKyWPkt+S+KEVmFL+ElEEIL+vieP+EF+K
   mKIAA0044   347 QFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVK 396  

                   imvPLFrQIArCvsSsHFQVAERALylWNNeyivsLIeqNrkvILPIiFP
                   im+PLFrQ+A+CvsS+HFQVAERALy+WNNeyi+sLI++N++ ILPI+FP
   mKIAA0044   397 IMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFP 446  

                   aLernskeHWNqtihsLvyNVlKlFmEmdqkLFdectakYkedrakekek
                   +L+rnsk+HWN+                                      
   mKIAA0044   447 SLYRNSKTHWNK-------------------------------------- 458  

                   eekReelWkkLEelas<-*
                                      
   mKIAA0044     - ----------------    -    

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