hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03660/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0041  ( 807 res)   mbg03660

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ArfGap   Putative GTP-ase activating proteins for the   225.2    5.5e-63   1
PH       Pleckstrin homology domain.                     73.8    2.1e-17   1
ANK      ankyrin repeats                                 41.9    8.5e-08   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     304   400 ..     1    82 []    73.8  2.1e-17
ArfGap     1/1     436   557 ..     1   139 []   225.2  5.5e-63
ANK        1/3     669   698 ..     1    30 []    21.5     0.12
ANK        2/3     702   731 ..     1    30 []    16.0      5.2
ANK        3/3     735   764 ..     1    30 []     4.5  1.2e+03

Alignments of top-scoring domains:
PH: domain 1 of 1, from 304 to 400: score 73.8, E = 2.1e-17
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk...kpkgsipL
                      +++eG+L k+ ++ +++w +r+f + n++L+y k+ +++    + +L
   mKIAA0041   304    IVMEGYLFKRAsnaFkTWNRRWFSIQNNQLVYQKKFkdsPTVVVEDL 350  

                   sgcsvre.p......cFeivt.drtlllqAeseeereeWvealqsaiaka
                   + c+v++ ++ +++ cFe+v+++++  lqA+se+ r+ W++a q  ia a
   mKIAA0041   351 RLCTVKHcEdierrfCFEVVSpTKSCMLQADSEKLRQAWIKAVQTSIATA 400  

                   <-*
                      
   mKIAA0041     -     -    

ArfGap: domain 1 of 1, from 436 to 557: score 225.2, E = 5.5e-63
                   *->eealqlLRsikpgNkkCfDCGavpnPtWaSvnlGvflCieCSGiHRs
                      e alq++++i+ gN  C+DCG +++P+WaS+nlG++lCieCSGiHRs
   mKIAA0041   436    ESALQRVQCIP-GNTSCCDCG-LADPRWASINLGITLCIECSGIHRS 480  

                   LfGvHiSkVnvRSltLDtWteeeLrllesckgGNenansfwesnlddfsl
                   L GvH+SkV  RSltLDtW++ eL +l+ c++GN+++n+++e++l+++  
   mKIAA0041   481 L-GVHFSKV--RSLTLDTWEP-ELLKLM-CELGNDVINRVYEAKLEKMGV 525  

                   kpkdsdaaasvKCeddrqkyesfiaaKYeeklfrvdkesaee<-*
                   k+++++         +rq++e++i+aKY+e++f vdk+sa     
   mKIAA0041   526 KKPQPG---------QRQEKEAYIRAKYVERKF-VDKYSALL    557  

ANK: domain 1 of 3, from 669 to 698: score 21.5, E = 0.12
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +  TpL  A+  g+l ++++Ll++ga++n    
   mKIAA0041   669    NQATPLIQAVLGGSLVTCEFLLQNGANVNQ    698  

ANK: domain 2 of 3, from 702 to 731: score 16.0, E = 5.2
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +Gr pLH+A   g+   v l+l++ga+ +a   
   mKIAA0041   702    QGRGPLHHATVLGHTGQVCLFLKRGANQHA    731  

ANK: domain 3 of 3, from 735 to 764: score 4.5, E = 1.2e+03
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G+ pL +A+e  n ++v lL  +  + ++   
   mKIAA0041   735    EGKDPLSIAVEAANADIVTLLRLARMNEEM    764  

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