hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03660/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0041  ( 807 res)   mbg03660

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ArfGap   Putative GTPase activating protein for Arf     226.7    3.4e-64   1
PH       PH domain                                       79.5      7e-20   1
Ank      Ankyrin repeat                                  57.2    3.6e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1     304   398 ..     1    92 []    79.5    7e-20
ArfGap     1/1     436   557 ..     1   137 []   226.7  3.4e-64
Ank        1/3     669   701 ..     1    33 []    30.1    5e-05
Ank        2/3     702   734 ..     1    33 []    22.2    0.012
Ank        3/3     735   765 ..     1    33 []     5.3       35

Alignments of top-scoring domains:
PH: domain 1 of 1, from 304 to 398: score 79.5, E = 7e-20
                   *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk.kkpkgsipL
                      +++eG+L+k+ ++++k+w +R+f ++n++L+y k+ k++  + + +L
   mKIAA0041   304    IVMEGYLFKRAsnAFKTWNRRWFSIQNNQLVYQKKFKdSPTVVVEDL 350  

                   sgiqvekvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<
                   + ++v++++d++r++cFe++++++ +  lqa+se+ r+ W+ka q +i+ 
   mKIAA0041   351 RLCTVKHCEDIERRFCFEVVSpTK-SCMLQADSEKLRQAWIKAVQTSIA  398  

                   -*
                     
   mKIAA0041     -    -    

ArfGap: domain 1 of 1, from 436 to 557: score 226.7, E = 3.4e-64
                   *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn
                      + +lq++++++ gN  C+DCg  ++P+WaS+nlG++lCieCSGiHR+
   mKIAA0041   436    ESALQRVQCIP-GNTSCCDCGL-ADPRWASINLGITLCIECSGIHRS 480  

                   LfGvHiSkVnvRSltLDsWtpeeLrklesckgGNenansfwEsnlddfsl
                   L GvH+SkV  RSltLD+W+p eL kl+ c++GN+++n+++E++l+++ +
   mKIAA0041   481 L-GVHFSKV--RSLTLDTWEP-ELLKLM-CELGNDVINRVYEAKLEKMGV 525  

                   kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-*
                   k++++         +rq++e++i+aKY+e++fv+k++      
   mKIAA0041   526 KKPQPG--------QRQEKEAYIRAKYVERKFVDKYSALL    557  

Ank: domain 1 of 3, from 669 to 701: score 30.1, E = 5e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  TPL  A+l g+l  +++Ll++GA++n +d    
   mKIAA0041   669    NQATPLIQAVLGGSLVTCEFLLQNGANVNQRDV    701  

Ank: domain 2 of 3, from 702 to 734: score 22.2, E = 0.012
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+ PLH+A   g++  v l+l++GA+ +a+d    
   mKIAA0041   702    QGRGPLHHATVLGHTGQVCLFLKRGANQHATDE    734  

Ank: domain 3 of 3, from 735 to 765: score 5.3, E = 35
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G  PL +A++  n+++v+lL    A  n   +   
   mKIAA0041   735    EGKDPLSIAVEAANADIVTLLRL--ARMNEEMR    765  

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