hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08496/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0038  ( 237 res)   mbg08496

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM      RNA recognition motif                           70.2    2.6e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM        1/1      52   123 ..     1   121 []    70.2  2.6e-16

Alignments of top-scoring domains:
RRM: domain 1 of 1, from 52 to 123: score 70.2, E = 2.6e-16
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t +VgNL  p+++ + d+  +F              +    ++svr+
   mKIAA0038    52    TAYVGNL--PFNTVQGDIDAIF--------------KDLS-IRSVRL 81   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   vrdkd                     T k kGf++VeF+++++ + A  +
   mKIAA0038    82 VRDKD---------------------TDKFKGFCYVEFDEVDSLKEA--L 108  

                   ealnaskGkeledgGrptlglrVe<-*
                     ++   G  l  g+r    lrV+   
   mKIAA0038   109 -TYD---GALL--GDRS---LRVD    123  

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