hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08496/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0038  ( 237 res)   mbg08496

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     61.8    1.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RRM_1      1/1      53   122 ..     1    74 []    61.8  1.5e-14

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 53 to 122: score 61.8, E = 1.5e-14
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                       +VgNLp++t + d+ ++F++  +i s+++vrD  + t++ kGf++V
   mKIAA0038    53    AYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRD--KDTDKFKGFCYV 96   

                   eFedeedAekAldalnGkelggrelrv<-*
                   eF+  ++ ++Al  ++G  lg+r lrv   
   mKIAA0038    97 EFDEVDSLKEALT-YDGALLGDRSLRV    122  

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