hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00603/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0035  ( 703 res)   mpj00603

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SRP40_C  SRP40, C-terminal domain                       210.4    2.8e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SRP40_C    1/1     605   700 ..     1    99 []   210.4  2.8e-59

Alignments of top-scoring domains:
SRP40_C: domain 1 of 1, from 605 to 700: score 210.4, E = 2.8e-59
                   *->kkskskstntepakvdknskrkkkPFrRVdeekqiifvserlrDNsf
                      kk+k+ ++nt+p k++k+++r+++PFrRV+ee+  i+v++r++DNsf
   mKIAA0035   605    KKVKLETPNTFP-KRKKGERRASSPFRRVREEE--IEVDSRVADNSF 648  

                   dskaGAegdWGekANevLgkvrGKdFRhEKTKKKRGSYRGGsInqevnSi
                   d+k+GA+gdWGe+AN+vL++++GK+FRhEKTKKKRGSYRGGsI+++vnS+
   mKIAA0035   649 DAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSV 698  

                   KF<-*
                   KF   
   mKIAA0035   699 KF    700  

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