hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg01962/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0034 ( 1684 res) mbg01962 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CLH Clathrin heavy chain repeat homology 1087.8 0 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CLH 1/7 547 689 .. 1 161 [] 153.1 2.8e-41 CLH 2/7 696 838 .. 1 161 [] 166.8 2.2e-45 CLH 3/7 843 982 .. 1 161 [] 154.4 1.1e-41 CLH 4/7 989 1134 .. 1 161 [] 170.9 1.3e-46 CLH 5/7 1138 1279 .. 1 161 [] 160.8 1.4e-43 CLH 6/7 1284 1429 .. 1 161 [] 163.2 2.5e-44 CLH 7/7 1432 1591 .. 1 161 [] 157.4 1.5e-42 Alignments of top-scoring domains: CLH: domain 1 of 7, from 547 to 689: score 153.1, E = 2.8e-41 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq ++ +++ d++++v+ f+ ++nl+++++++L+++lk+n+ + + +lq mKIAA0034 547 VQDEEPLADITQIVDVFM-EYNLIQQCTAFLLDALKNNR-PSEGPLQ 591 tkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekakl t+L+e++++++pq+++++l+ +++++hyd+ ++++lceka+l mKIAA0034 592 TRLLEMNLMHAPQVADAILG---------NQMFTHYDRAHIAQLCEKAGL 632 yWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwae ++a+e++++ l+++k+A+v+++ l n+e++++y++ +++e +e mKIAA0034 633 L-QRALEHFTD-LYDIKRAVVHTHLL----NPEWLVNYFGS-LSVEDSLE 675 vlkalldkprflla<-* +l+a+l ++ ++++ mKIAA0034 676 CLRAMLSANIRQNL 689 CLH: domain 2 of 7, from 696 to 838: score 166.8, E = 2.2e-45 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq + +++ +++++ ++elfe ++ +e+L+++L si++ s++p+++ mKIAA0034 696 ASKYHEQLSTQSLIELFE-SFKSFEGLFYFLGSIVNF---SQDPDVH 738 tkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekakl +k+i++++k+ ++ke+e+++ + sn+yd+e+v++++++akl mKIAA0034 739 FKYIQAACKTGQIKEVERIC----------RESNCYDPERVKNFLKEAKL 778 yWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwae + +++++++++d+++f++++v+++++ +n++k+ie++v++ np+ + mKIAA0034 779 T-DQLPLIIVCDRFDFVHDLVLYLYR---NNLQKYIEIYVQKVNPSRLPV 824 vlkalldkprflla<-* v++ lld ++ +++ mKIAA0034 825 VIGGLLDVDCSEDV 838 CLH: domain 3 of 7, from 843 to 982: score 154.4, E = 1.1e-41 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq +l+++ + +++e+v ++e krn+l++L+p+Le+ +e+ +e+pa + mKIAA0034 843 ILVVRGQFSTDELVAEVE-KRNRLKLLLPWLEARIHEG--CEEPATH 886 tkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekakl ++L+++y+++++++e ++ + + +yd ++vgk+cek+++ mKIAA0034 887 NALAKIYIDSNNNPERFLRE------------NPYYDSRVVGKYCEKRDP 924 yWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwae +a+++y++ ++++ ++i++++e+ ++++ + +y+v++ +pelw mKIAA0034 925 H--LACVAYER-GQCDLELINVCNEN---SLFKSLSRYLVRRKDPELWGS 968 vlkalldkprflla<-* vl ++ ++r+l++ mKIAA0034 969 VLLESNPYRRPLID 982 CLH: domain 4 of 7, from 989 to 1134: score 170.9, E = 1.3e-46 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkens.fsenpal l e dp++vs +v++f+ +++l++eLi++Le+i++ ns fse+ +l mKIAA0034 989 LSETQDPEEVSVTVKAFM-TADLPNELIELLEKIVLDNSvFSEHRNL 1034 qtkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekak q++Li++++k+d+ +++e+++ ++++yd + ++++++ + mKIAA0034 1035 QNLLILTAIKADRTRVMEYIN-----------RLDNYDAPDIANIAISNE 1073 lyWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwa l eea+ ++ k ++ + +A+++lie+i gn+++a e+a+++n p +w+ mKIAA0034 1074 LF-EEAFAIFRK-FDVNTSAVQVLIEHI--GNLDRAYEFAERCNEPAVWS 1119 evlkalldkprflla<-* +++ka+l+k ++++a mKIAA0034 1120 QLAKAQLQKGMVKEA 1134 CLH: domain 5 of 7, from 1138 to 1279: score 160.8, E = 1.4e-43 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq +++++dp ++ evv+++ ++++eeL++yL++++k+ + +++++ mKIAA0034 1138 YIKADDPSSYMEVVQAAN-ASGNWEELVKYLQMARKK---ARESYVE 1180 tkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekakl t+Li++ ak+++ e+e+++ +++n+++++ vg++c+++k mKIAA0034 1181 TELIFALAKTNRLAELEEFI----------NGPNNAHIQQVGDRCYDEKM 1220 yWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwae y ++a++ly + +nf ++++tl++l g++++a++ a+k+n++++w+e mKIAA0034 1221 Y-DAAKLLYNN-VSNFGRLASTLVHL---GEYQAAVDGARKANSTRTWKE 1265 vlkalldkprflla<-* v++a++d ++f+la mKIAA0034 1266 VCFACVDGKEFRLA 1279 CLH: domain 6 of 7, from 1284 to 1429: score 163.2, E = 2.5e-44 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq l++++++++++e++ +++ +r+ +eeLi+ Le++l+++ +++++++ mKIAA0034 1284 LHIVVHADELEELINYYQ-DRG-FEELITMLEAALGLE--RAHMGMF 1326 tkLielyakydpqkeiefldnFDIaLAqrleksnhydlekvgklcekakl t+L++ly+k++pqk+ e+l+ +++++ +++kv++++e+a+l mKIAA0034 1327 TELAILYSKFKPQKMREHLE----------LFWSRVNIPKVLRAAEQAHL 1366 yWeeavelykkdlgnfkdAivtlieli.dagniekaieyavkqnnpelwa + +e+v+ly+k + ++++Ai+t++++++da+ ++++++ k++n+el++ mKIAA0034 1367 W-AELVFLYDK-YEEYDNAIITMMNHPtDAWKEGQFKDIITKVANVELYY 1414 evlkalldkprflla<-* ++++++l++++ ll+ mKIAA0034 1415 KAIQFYLEFKPLLLN 1429 CLH: domain 7 of 7, from 1432 to 1591: score 157.4, E = 1.5e-42 *->lleltdpidvsevvelfeCkrnlleeLipyLesilkensfsenpalq l++l++++d+++ v +f+ k +l++++pyL s++++n++s+n+ l+ mKIAA0034 1432 LMVLSPRLDHTRAVNYFS-KVKQLPLVKPYLRSVQNHNNKSVNESLN 1477 tkLielyakydpqkeiefldnFD.IaLAqrleksnhydlekvgklcekak ++ i ++++++++ +i+ +dnFD+I+LAqrlek+ + ++++++++++k + mKIAA0034 1478 NLFITEEDYQALRTSIDAYDNFDnISLAQRLEKHELIEFRRIAAYLFKGN 1527 lyWeeavelykkdlgnfkdAivtlielidagniekaieyavkqnnpelwa ++W+++vel+kk ++++kdA++ + e++d+++ e++++++ + ++e++ mKIAA0034 1528 NRWKQSVELCKK-DSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFG 1576 evlkalldkprflla<-* ++l++++d++r++ + mKIAA0034 1577 ACLFTCYDLLRPDVV 1591 //