hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01962/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0034 ( 1684 res) mbg01962 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Clathrin Region in Clathrin and VPS 1145.1 0 7 Clathrin_propel Clathrin propeller repeat 167.4 2.3e-46 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Clathrin_propel 1/7 29 66 .. 1 43 [] 24.3 0.0029 Clathrin_propel 2/7 70 104 .. 1 43 [] 24.9 0.0019 Clathrin_propel 3/7 112 143 .. 1 43 [] 24.6 0.0023 Clathrin_propel 4/7 158 197 .. 1 43 [] 21.4 0.021 Clathrin_propel 5/7 208 244 .. 1 43 [] 29.2 9.3e-05 Clathrin_propel 6/7 263 298 .. 1 43 [] 21.5 0.02 Clathrin_propel 7/7 306 340 .. 1 43 [] 22.6 0.0092 Clathrin 1/7 547 689 .. 1 156 [] 144.6 1.8e-39 Clathrin 2/7 696 838 .. 1 156 [] 178.8 8.7e-50 Clathrin 3/7 843 982 .. 1 156 [] 169.7 5e-47 Clathrin 4/7 989 1134 .. 1 156 [] 181.3 1.6e-50 Clathrin 5/7 1138 1279 .. 1 156 [] 186.1 5.5e-52 Clathrin 6/7 1284 1429 .. 1 156 [] 174.5 1.7e-48 Clathrin 7/7 1432 1575 .. 1 156 [] 148.8 9.3e-41 Alignments of top-scoring domains: Clathrin_propel: domain 1 of 7, from 29 to 66: score 24.3, E = 0.0029 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* g+++++i f t +mes+k+i++++ ++ + +v+i+d + mKIAA0034 29 GINPANIGFSTLTMESDKFICIRE-----KVGEQAQVVIIDMN 66 Clathrin_propel: domain 2 of 7, from 70 to 104: score 24.9, E = 0.0019 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* ++i+++i++++aim++ +++a++ g +qi+++e mKIAA0034 70 NPIRRPISADSAIMNPASKVIALK--------AGKTLQIFNIE 104 Clathrin_propel: domain 3 of 7, from 112 to 143: score 24.6, E = 0.0023 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* ++++ d++f++ w++++++ l++++ v++++ e mKIAA0034 112 HTMTDDVTFWK-----WISLNTVA------LVTDNAVYHWSME 143 Clathrin_propel: domain 4 of 7, from 158 to 197: score 21.4, E = 0.021 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* +a +++i+++t ++w+ + +i aq++++ g +q+++++ mKIAA0034 158 LAGCQIINYRTDAKQKWLLLTGIS---AQQNRVVGAMQLYSVD 197 Clathrin_propel: domain 5 of 7, from 208 to 244: score 29.2, E = 9.3e-05 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* +a f++++ +++ +es+++++a++ ++ ggk++i+++ mKIAA0034 208 AASFAQFKMEGNAEESTLFCFAVR------GQAGGKLHIIEVG 244 Clathrin_propel: domain 6 of 7, from 263 to 298: score 21.5, E = 0.02 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* ++ ++dfp+a++ s k+ ++ ++k+g+++++dle mKIAA0034 263 PPEA-QNDFPVAMQISEKHDVVFL------ITKYGYIHLYDLE 298 Clathrin_propel: domain 7 of 7, from 306 to 340: score 22.6, E = 0.0092 *->gaifsdidfptaimeswkgilainkqnaqdlakggkvqivdle<-* ++i++ +f ta++e + gi+++n ++g+v+ v +e mKIAA0034 306 NRISGETIFVTAPHEATAGIIGVN--------RKGQVLSVCVE 340 Clathrin: domain 1 of 7, from 547 to 689: score 144.6, E = 1.8e-39 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn ++ ++ d++++V+ f++++l+++++++L++alk n+ + e +lq+ mKIAA0034 547 VQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNR-PSEGPLQT 592 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA +L+e++++++pq ++++l+ n+++++yD++++a+lceka+l ++A mKIAA0034 593 RLLEMNLMHAPQVADAILG----NQMFTHYDRAHIAQLCEKAGLL--QRA 636 fllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlkac ++++++ l+++k+a+v+++ l n++++v+y+ +++e+ e+l a+ mKIAA0034 637 LEHFTD-LYDIKRAVVHTHLL----NPEWLVNYFGS-LSVEDSLECLRAM 680 ldkkrflla<-* l ++ ++++ mKIAA0034 681 LSANIRQNL 689 Clathrin: domain 2 of 7, from 696 to 838: score 178.8, E = 8.7e-50 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn +++++ +++++ l+e+fe+++ +e+L+++L s+++ s++p++++ mKIAA0034 696 ASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNF---SQDPDVHF 739 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA ++i+a++k++++ke+er++ +++n+yD+e+v++++++akl+ +++ mKIAA0034 740 KYIQAACKTGQIKEVERIC-----RESNCYDPERVKNFLKEAKLT--DQL 782 fllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlkac +l++++D+++f++++v+++++ +n+q++++++v++ np+ + v++ + mKIAA0034 783 PLIIVCDRFDFVHDLVLYLYR---NNLQKYIEIYVQKVNPSRLPVVIGGL 829 ldkkrflla<-* ld ++++++ mKIAA0034 830 LDVDCSEDV 838 Clathrin: domain 3 of 7, from 843 to 982: score 169.7, E = 5e-47 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn +++++++++++elV ++ekr++l++L+p+Le+ ++e+ +eepa++n mKIAA0034 843 ILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG--CEEPATHN 887 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA +L+++yi+s++++e+++ e n +yD+++v+++cek++++ +A mKIAA0034 888 ALAKIYIDSNNNPERFLRE-------NPYYDSRVVGKYCEKRDPH---LA 927 fllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlkac +++y++ ++++ ++i++++e+ ++++ + +y+v+r++pelw vl ++ mKIAA0034 928 CVAYER-GQCDLELINVCNEN---SLFKSLSRYLVRRKDPELWGSVLLES 973 ldkkrflla<-* + ++r+l++ mKIAA0034 974 NPYRRPLID 982 Clathrin: domain 4 of 7, from 989 to 1134: score 181.3, E = 1.6e-50 *->lielsdpidvselVeifekrglleeLipyLesalkens.fseepalq l+e++dp++vs +V++f++++l++eLi++Le+++++ns fse+++lq mKIAA0034 989 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSvFSEHRNLQ 1035 nlLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFwee nlLi+++ik+d++++me+++ +++nyD++++a+++++++l ee mKIAA0034 1036 NLLILTAIKADRTRVMEYIN------RLDNYDAPDIANIAISNELF--EE 1077 AfllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlka Af ++ k ++ + +a+++lie+i gn++ra+++a+++n p +w++++ka mKIAA0034 1078 AFAIFRK-FDVNTSAVQVLIEHI--GNLDRAYEFAERCNEPAVWSQLAKA 1124 cldkkrflla<-* +l+k ++++a mKIAA0034 1125 QLQKGMVKEA 1134 Clathrin: domain 5 of 7, from 1138 to 1279: score 186.1, E = 5.5e-52 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn +i+++dp++++e+V+++ +g++eeL++yL++a+k+ ++e+++++ mKIAA0034 1138 YIKADDPSSYMEVVQAANASGNWEELVKYLQMARKK---ARESYVET 1181 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA +Li+a +k+++++e+e+++ +++nn++i++v+++c++ k+y ++A mKIAA0034 1182 ELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMY--DAA 1224 fllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlkac +lly++ +snf ++++tl++l g+yq+avd a+k+n++++w+ev++ac mKIAA0034 1225 KLLYNN-VSNFGRLASTLVHL---GEYQAAVDGARKANSTRTWKEVCFAC 1270 ldkkrflla<-* +d+k+f+la mKIAA0034 1271 VDGKEFRLA 1279 Clathrin: domain 6 of 7, from 1284 to 1429: score 174.5, E = 1.7e-48 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn l++++++++++el++++++rg +eeLi Le+al+++ ++++++++ mKIAA0034 1284 LHIVVHADELEELINYYQDRG-FEELITMLEAALGLE--RAHMGMFT 1327 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA +L+++y+k++pqk++e+le l++++ +i+kv r++e+a+l+ +e+ mKIAA0034 1328 ELAILYSKFKPQKMREHLE-----LFWSRVNIPKVLRAAEQAHLW--AEL 1370 fllykkDlsnfkdaivtlieli.eagnyqravdyavkrnnpelwaevlka ++ly+k ++++++ai+t+++++++a+ +++d++ k++n+el+++++++ mKIAA0034 1371 VFLYDK-YEEYDNAIITMMNHPtDAWKEGQFKDIITKVANVELYYKAIQF 1419 cldkkrflla<-* +l++k++ll+ mKIAA0034 1420 YLEFKPLLLN 1429 Clathrin: domain 7 of 7, from 1432 to 1575: score 148.8, E = 9.3e-41 *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn l++ls+++d+++ V++f+k ++l++++pyL+s++++ ++++ +++ mKIAA0034 1432 LMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNES 1475 lLieayiksdpqkemerlealaknlknnnyDiekvarlcekakly.Fwee l+ + + ++d+q+++ ++ ++n+D+ +a+++ek++l +F++ mKIAA0034 1476 LNNLFITEEDYQALRTSID------AYDNFDNISLAQRLEKHELIeFRRI 1519 AfllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlka A +l+k ++++k+ +++++++ ++y++a++ya + +++el +e+l++ mKIAA0034 1520 AAYLFKG-NNRWKQSVELCKKD---SLYKDAMQYASESKDTELAEELLQW 1565 cldkkrflla<-* +l++++++++ mKIAA0034 1566 FLQEEKRECF 1575 //