hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01639/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0030  ( 907 res)   mph01639

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MCM      minichromosome  maintenance proteins          1115.1          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MCM        1/1     293   806 ..     1   591 []  1115.1        0

Alignments of top-scoring domains:
MCM: domain 1 of 1, from 293 to 806: score 1115.1, E = 0
                   *->kplsiReLradhlgkLVrvsGiVTRtSeVrPklkrasftCekCgatl
                       ++++R+Lr+ hl++L+r+sG+VT++++V+P+l++++++C kC+++l
   mKIAA0030   293    LVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCSKCNFVL 339  

                   rpeiqdYsgreteptvCppesCqsptsdgGkkkCendPfslnheraSkFi
                   +p++q+ +++e++p++Cp+  Cqs ++           f++n+e+ + ++
   mKIAA0030   340 GPFCQS-QNQEVKPGSCPE--CQSAGP-----------FEINMEE-TIYQ 374  

                   DfQkiklQEsPeeVPaGqlPRsvdvildgdLVDkvkPGDrVevTGIyrnv
                   ++Q+i++QEsP++V aG+lPRs+d il++dLVD++kPGD++e TGIy+n+
   mKIAA0030   375 NYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHNN 424  

                   PdrtgfklntakglpkgdnRGivfaTyieanhVrkldikrsfeacsiieg
                      ++++lnta+g+p       vfaT+i+anhV k+d+            
   mKIAA0030   425 ---YDGSLNTANGFP-------VFATIILANHVAKKDN------------ 452  

                   dasqeeeeqDekdevsslsdeeeeeirklskdSpdIyekLskSlAPSIYG
                              k++v++l+de++++i  lskd ++I ek+++S+APSIYG
   mKIAA0030   453 -----------KVAVGELTDEDVKMITGLSKD-QQIGEKIFASIAPSIYG 490  

                   hedIKKAILLlLfGGveKnlpdgmikiRGDINiLLlGDPGTAKSQlLKYV
                   hedIK++++L+LfGG++Kn+++++ k+RGDIN+LL+GDPGTAKSQ+LKY+
   mKIAA0030   491 HEDIKRGLALALFGGEPKNPGGKH-KVRGDINVLLCGDPGTAKSQFLKYI 539  

                   ekvAPRAVYTtGKGSSAVGLTAaVtrDpeTrEftLEgGALVLADnGVCCI
                   ekv++RA++TtG+G+SAVGLTA+V+r+p++rE+tLE+GALVLAD+GVC+I
   mKIAA0030   540 EKVSSRAIFTTGQGASAVGLTAYVQRHPVSREWTLEAGALVLADRGVCLI 589  

                   DEFDKMddsDRtAIHEaMEQQTISIAKAGItTtLNARcSvLAAANPigGR
                   DEFDKM+d+DRt+IHEaMEQQ+ISI+KAGI+T+L+ARc+v+AAANPigGR
   mKIAA0030   590 DEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGR 639  

                   YdpkltpaeNIdLpapiLSRFDLlFvVlDevDeerDreLAkHVvdlHrrs
                   Ydp+lt++eN+dL++pi+SRFD l+vV+D+vD+++D++LA++Vv +H+r+
   mKIAA0030   640 YDPSLTFSENVDLTEPIISRFDVLCVVRDTVDPVQDEMLARFVVGSHVRH 689  

                   hPgedegeaLplGeadieetedeevsAae.geedqEqiaekhdnLlqvke
                   hP+++ +          e + +   +  e++     ++++++     v++
   mKIAA0030   690 HPSNKKD----------EGLTNG--GTLEpA-----MPNTYG-----VEP 717  

                   isiefLrkYIaYARekikPkLseeaaeklvkaYvdlRkedsqseaDskrs
                   +++e+L+kYI YA+e+++PkL++++++k++++Y+dlRke+++++      
   mKIAA0030   718 LPQEVLKKYIIYAKERVRPKLNQMDQDKVARMYSDLRKESMATG------ 761  

                   SiPITvRqLESiIRLsEAlAKlrLsdvVeeaDVeeAirLlreSii<-*
                   SiPITvR++ES+IR++EA+A+++L+d V+e+DV++Air++ eS+i   
   mKIAA0030   762 SIPITVRHIESMIRMAEAHARMHLRDYVMEDDVNMAIRVMMESFI    806  

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