hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph01639/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0030 ( 907 res) mph01639 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MCM MCM2/3/5 family 736.4 1.2e-217 1 AAA_5 ATPase family associated with various ce 3.5 0.012 1 AAA_3 ATPase family associated with various ce 2.6 0.0011 1 Rubredoxin Rubredoxin -3.6 0.6 1 Mg_chelatase Magnesium chelatase, subunit ChlI -117.2 0.00034 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Rubredoxin 1/1 327 364 .. 1 49 [] -3.6 0.6 AAA_3 1/1 521 662 .. 1 133 [] 2.6 0.0011 AAA_5 1/1 521 668 .. 1 184 [] 3.5 0.012 Mg_chelatase 1/1 487 678 .. 1 209 [] -117.2 0.00034 MCM 1/1 463 806 .. 1 374 [] 736.4 1.2e-217 Alignments of top-scoring domains: Rubredoxin: domain 1 of 1, from 327 to 364: score -3.6, E = 0.6 *->makYvCkvCGYvYDpaeGDpdngipPGTpFedLPdDWvCPvC.GapK m kY C+ C++v p + + ++PG CP C+ a+ mKIAA0030 327 MVKYNCSKCNFVLGPFCQSQNQEVKPG----------SCPECqSAG- 362 dqF<-* F mKIAA0030 363 -PF 364 AAA_3: domain 1 of 1, from 521 to 662: score 2.6, E = 0.0011 *->HvLlegvPGlaKTllvkalAkaldlkfkRiQaFTpDLlPsDilGtev vLl g PG+aK ++ k + k+ +R FT + +G + mKIAA0030 521 NVLLCGDPGTAKSQFLKYIEKV----SSRAI-FTTG-QGASAVGLTA 561 ydekt...refefkkGPvFan...llLADEINRappKtQsALLEaMeElr y ++++ +re+++++G ++ ++++ L DE + + ++ EaMe + mKIAA0030 562 YVQRHpvsREWTLEAGALVLAdrgVCLIDEFDKMNDQDRTSIHEAMEQ-Q 610 qVTv..dgethkLpepFlVlATqNPi....eqeGtYp....LPEAqlDRF ++++++g +L+ +V+A NPi+++ + + t+ ++ +L E + RF mKIAA0030 611 SISIskAGIVTSLQARCTVIAAANPIggryDPSLTFSenvdLTEPIISRF 660 ll<-* + mKIAA0030 661 DV 662 AAA_5: domain 1 of 1, from 521 to 668: score 3.5, E = 0.012 *->pvlLvGppGtGKtelaerLaaalsgqggrpvfyvqltrdtteedllg +vlL G+pGt+K++ + + + s ++ +++ q+ + ++ mKIAA0030 521 NVLLCGDPGTAKSQFLKYIEKVSS---RAIFTTGQGASAVGLTAYVQ 564 rrniaplleGngttswvdgpLvrAaryaretegslpeghilvlDEinras r + ++ ++ g+Lv A r ++++DE+++ + mKIAA0030 565 RHPV------SREWTLEAGALVLADR------------GVCLIDEFDKMN 596 pevlnvLlslLderrlllpdggelvkvppydklaergreeldlwklgrli ++ + + ++ +++ g + + + mKIAA0030 597 DQDRTSIHEAMEQQSISISKAGIVTSLQAR-------------------- 626 hdfrlIatsNpld.......gprglnelsaALrrRFlfvtvdpp<-* + +Ia++Np +++ +++ + + +l +++++RF v + mKIAA0030 627 --CTVIAAANPIGgrydpslTFSENVDLTEPIISRFDVLCVVRD 668 Mg_chelatase: domain 1 of 1, from 487 to 678: score -117.2, E = 0.00034 *->DlaDVkGQeqAKRALEIAAAGg........H......NLLmiGPPGs + G+e KR L A Gg++++++++H+ +++ N+L++G PG+ mKIAA0030 487 ---SIYGHEDIKRGLALALFGGepknpggkHkvrgdiNVLLCGDPGT 530 GKtMLAkRLpgILPPLseeEaLEvtaihSvaGllggdgglirrRPFRaPH K+ + L +I E + ai +G + ++ ++ mKIAA0030 531 AKS---QFLKYI-------EKVSSRAIF-TTG---QGASAVGLTAYVQ-R 565 HsaSaaALvGGGsgiprPGEISLAHnGVLFLDElPEFsrrvLEsLRqPLE H +S+ G+ LA +GV DE+ + + s + +E mKIAA0030 566 HPVSRE------W-TLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME 608 dGevtIsRaaakvtyPArFqLVAAmNPCPCGylgdpdkrCrCsprqirrY ++ Is a ++ Ar++ +AA+NP G + dp+ + + mKIAA0030 609 QQSISISKAGIVTSLQARCTVIAAANP--IGGRYDPSLTFSENVD----- 651 lsrlSGPLLDRIDlqv....eVprlsaeeL<-* l +P+ R+D+ ++ V +++ e L mKIAA0030 652 ---LTEPIISRFDVLCvvrdTVDPVQDEML 678 MCM: domain 1 of 1, from 463 to 806: score 736.4, E = 1.2e-217 *->deeeirelakdpdiyeklarSIAPsIyGhedvKkAilLqLFGGvrKn d+++i l+kd i ek+ +SIAPsIyGhed+K++++L+LFGG +Kn mKIAA0030 463 DVKMITGLSKDQQIGEKIFASIAPSIYGHEDIKRGLALALFGGEPKN 509 lpdgtrlRGDINVLLvGDPGKTAKSQLLKyveklaPRaVYTsGkGSSAaG ++++++RGDINVLL+GDPG TAKSQ+LKy+ek++ Ra++T+G+G+SA+G mKIAA0030 510 PGGKHKVRGDINVLLCGDPG-TAKSQFLKYIEKVSSRAIFTTGQGASAVG 558 LTAaVvrDpetgEftLEaGALVLADgGvCCIDEFDKMdesDRvAIHEAME LTA+V+r+p+++E+tLEaGALVLAD GvC+IDEFDKM+++DR++IHEAME mKIAA0030 559 LTAYVQRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAME 608 QQTISIAKAGIvatLNARtSvLAAANPigGRYdpsktvaeNInlpapLLS QQ+ISI+KAGIv++L+AR++v+AAANPigGRYdps+t++eN++l++p++S mKIAA0030 609 QQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSLTFSENVDLTEPIIS 658 RFDLiFvllDkpdeekDerLAeHivslHrkgep.eqedee.g.gllvaga RFD+++v++D++d+++De+LA+++v++H +++p++++de +g mKIAA0030 659 RFDVLCVVRDTVDPVQDEMLARFVVGSHVRHHPsNKKDEGlTnGG----- 703 dksaeesletepyveDllskrektlkekeidgeidpelLrkYIaYARenv + e+++ + +ve ++++e L+kYI YA+e+v mKIAA0030 704 --TLEPAMPNTYGVE-----------------PLPQEVLKKYIIYAKERV 734 kPkLseeAsekLvdaYvelRkegeqEsl.tgsssrssipITvRQLESlIR +PkL +++ +k + Y +lRk Es+ tgs ipITvR++ES+IR mKIAA0030 735 RPKLNQMDQDKVARMYSDLRK----ESMaTGS-----IPITVRHIESMIR 775 LSEAhAklrLseiVteeDVeeAirLlkeSlk<-* ++EAhA+++L+++V e+DV++Air+++eS++ mKIAA0030 776 MAEAHARMHLRDYVMEDDVNMAIRVMMESFI 806 //