hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbk/mbk00081/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0026  ( 288 res)   mbk00081

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MRG      MRG                                            310.8    1.6e-89   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MRG        1/1      16   276 ..     1   542 []   310.8  1.6e-89

Alignments of top-scoring domains:
MRG: domain 1 of 1, from 16 to 276: score 310.8, E = 1.6e-89
                   *->ssWDEwVpVGEEedRiLKytEENlklQreLakkAaarlqkttsklke
                            ++            E+N k+  +                  
   mKIAA0026    16    ------AE------------EDNFKKPTRSNM--------------- 29   

                   arkkkrlslPgvdsslkGkrseesesndskspttssspktkseegGHVed
                   +r+k+r++++g       k s +s+ ++ + p ++ + +     g   ++
   mKIAA0026    30 QRSKMRGAASG-------KKSAGSQPKNLD-PALPGRWG-----G---RS 63   

                   ptadkddtttvakkkkkkkpengnddstspftpDFGsfkkldeAlAktrk
                    +  +  + +++ k+k+k+p+ng+++sts                    +
   mKIAA0026    64 AENPPSGSVRKTRKNKQKAPGNGDGGSTS--------------------E 93   

                   peePtakKrkrrSedrsslrssDaaGNRsRDNSsGkkKekdkSGDkrldG
                    ++P++kKr                                         
   mKIAA0026    94 VPQPPRKKR----------------------------------------- 102  

                   eRrrvaekflrvtpkDvertdssplvEeednfaaempapkikieIPeeLK
                                    +r d  p+vE+e++f  +m   ++k++IPeeLK
   mKIAA0026   103 -----------------ARAD--PTVESEEAFKSRM---EVKVKIPEELK 130  

                   klLvDDWeyvtrnkklvaLPakvtVdtILedYlkhiAVelaisikeDSSR
                   ++Lv DW++vtr+k+l+ LPak++Vd+ILe Y++                
   mKIAA0026   131 PWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYANC--------------- 165  

                   aRnthsRparkmsreelnseskvdalkEvvaGLriYFdvcLGnmLLYkfE
                             k+s   +n+++k +a++Evv G+++YF+v+LG++LLYkfE
   mKIAA0026   166 ----------KKS--QGNVDNKDYAVNEVVGGIKEYFNVMLGTQLLYKFE 203  

                   RaQYkEllkkkFFLtDdNmkncslllNkSyEyinPSgdeeLisLrgstpd
                   R+QY+E+l+                                      +pd
   mKIAA0026   204 RPQYAEILLA-------------------------------------HPD 216  

                   TAnCDRLsesngspgpllgqqeyeaqLqKcllyiEKntPvHarsssaipy
                   +                                                 
   mKIAA0026   217 A------------------------------------------------- 217  

                   TaayklpvemrGFlnEtlsWkLlsdnsPpkdqkPlepSqiYGAeHLLRLf
                                                      ++SqiYGA+HLLRLf
   mKIAA0026   218 -----------------------------------PMSQIYGAPHLLRLF 232  

                   VkLPelLsytnmdeqslerLlkhlddFLkfLakNhdeyFsGesdY<-*
                   V+++++L+yt++de+sl++Ll +l+dFLk+LakN++  F  +sdY   
   mKIAA0026   233 VRIGAMLAYTPLDEKSLALLLGYLHDFLKYLAKNSASLFT-ASDY    276  

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