hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mni/mni27227/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0025 ( 419 res) mni27227 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- UBQ Ubiquitin homologues 60.6 2e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- UBQ 1/1 38 115 .. 1 72 [] 60.6 2e-13 Alignments of top-scoring domains: UBQ: domain 1 of 1, from 38 to 115: score 60.6, E = 2e-13 *->ieltvktldgektitlevkpsd.wTVselKekiaelegi.Ppeq.Qr ++l vk++++ ++ +le++ + +w+Vs lK+++ +++ +P+ ++Qr mKIAA0025 38 VTLLVKSPNQ-RHRDLELSGDRsWSVSRLKAHLSRVYPErPRPEdQR 83 LiyaGk.LeDd.tLaeygiqdgs..tihlvlr<-* Liy+Gk L D+++L++++ ++++++++hlv+ mKIAA0025 84 LIYSGKlLLDHqCLQDLLPKQEKrhVLHLVCN 115 //