hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni27227/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0025  ( 419 res)   mni27227

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
ubiquitin Ubiquitin family                               60.3    4.2e-14   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
ubiquitin   1/1      38   117 ..     1    83 []    60.3  4.2e-14

Alignments of top-scoring domains:
ubiquitin: domain 1 of 1, from 38 to 117: score 60.3, E = 4.2e-14
                   *->mkifVKtldgkgkvtdgstitlevdpsdTVlelKekIedkeg..ipp
                      + + VK ++++     +++ +l+ d+s++V+ lK++++ +  ++  p
   mKIAA0025    38    VTLLVKSPNQR-----HRDLELSGDRSWSVSRLKAHLSRVYPerPRP 79   

                   eqQrLiyaGkvLreDdktLaeYniqdgs.ftlhlvlrlr<-*
                   e QrLiy+Gk L  D+++L+++  +++++++lhlv   +   
   mKIAA0025    80 EDQRLIYSGKLL-LDHQCLQDLLPKQEKrHVLHLVCNVK    117  

//