hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth00575/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0024  ( 487 res)   mth00575

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSS      Phosphatidyl serine synthase                   754.1   5.8e-223   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSS        1/1     110   388 ..     1   310 []   754.1 5.8e-223

Alignments of top-scoring domains:
PSS: domain 1 of 1, from 110 to 388: score 754.1, E = 5.8e-223
                   *->PHPAlWRivFGvSVvYllfLqFlLFQtfdDirqflkWLDPkLggave
                      PHPAlWR+vFG+SV+Y+lfL+FlLF++f++++++++WLDP+L++a++
   mKIAA0024   110    PHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATR 156  

                   LpEkmEYgvNCsiispdrkTdrFkNLiwshlDiFafaHFtGWamKALLIR
                   ++++mEY+vNC++i+++r        i+sh+DiFaf+HF+GWamKALLIR
   mKIAA0024   157 EADIMEYAVNCHVITWER--------IVSHFDIFAFGHFWGWAMKALLIR 198  

                   hwvLCWvISImWEltEltFeHLLPNFaECWWDsiILDVLiCNGlGIwaGM
                   +++LCW+ISI+WEltEl+F+HLLPNFaECWWD++ILD+L+CNG+GIw+GM
   mKIAA0024   199 SYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGM 248  

                   kicrfLemRtYhWeSIknIpTtrGKiKRavlQFTPaSWskfeWkdskSPa
                   ++crfLemRtYhW+S+k+I+Tt+GKiKRavlQFTPaSW++++W+d   P+
   mKIAA0024   249 VVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFD---PK 295  

                   sslkRfaaVyllviiWLPPPikRLnFknCDtAHFFqLtELNTFFLKHvfw
                   ss++R+a++yl++iiW+                   +tELNTFFLKH+f+
   mKIAA0024   296 SSFQRVAGIYLFMIIWQ-------------------VTELNTFFLKHIFV 326  

                   ippkHPvVlwRLIlialIaAPtvRqyYvYltDlkpcKRVGtQCWVflaIc
                   ++++HP++++R+++i++I+APtvRqyY+YltD ++cKRVGtQCWVf++I+
   mKIAA0024   327 FQASHPLSWGRILFIGCITAPTVRQYYAYLTD-TQCKRVGTQCWVFGVIG 375  

                   vlEllICvKfGsh<-*
                   +lE+++C+KfG++   
   mKIAA0024   376 FLEAIVCIKFGQD    388  

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