hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg02458/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0023 ( 2112 res) mbg02458 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 32.0 8.3e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/2 165 205 .. 1 46 [] 12.9 4.4 WD40 2/2 209 247 .. 1 46 [] 19.1 0.47 Alignments of top-scoring domains: WD40: domain 1 of 2, from 165 to 205: score 12.9, E = 4.4 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + ++ + +g V++++++p+ p+++a++ Dg+i + mKIAA0023 165 PfTYHKVSNDASG--MVNDMKWNPTV-----PSMVAVCLaDGSISVL 204 d<-* mKIAA0023 205 Q 205 WD40: domain 2 of 2, from 209 to 247: score 19.1, E = 0.47 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW k+++tl+ + +Vt+v++sp g ++la+g ++gt+ + mKIAA0023 209 VvKVCATLP-PST--GVTCVCWSPKG------KQLAVGKqNGTVVQY 246 d<-* mKIAA0023 247 L 247 //