hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02458/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0023  ( 2112 res)   mbg02458

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        23.2     0.0063   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/2     167   205 ..     1    38 []     9.9       12
WD40       2/2     211   247 ..     1    38 []    13.3      4.7

Alignments of top-scoring domains:
WD40: domain 1 of 2, from 167 to 205: score 9.9, E = 12
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +v ++ ++ V++++++p  ++++a + +Dg+i +     
   mKIAA0023   167    TYHKVSnDASGMVNDMKWNPTVPSMVAVCLADGSISVLQ    205  

WD40: domain 2 of 2, from 211 to 247: score 13.3, E = 4.7
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ a+l+    +Vtcv++sp  g++la g  +gt+  +    
   mKIAA0023   211    KVCATLpPS-TGVTCVCWSPK-GKQLAVGKQNGTVVQYL    247  

//