hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00084/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0020  ( 496 res)   mtk00084

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Pumilio  Pumilio-like repeats                           116.6    2.7e-30   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Pumilio    1/6      13    48 ..     1    39 []    26.2   0.0046
Pumilio    2/6      49    84 ..     1    39 []    26.6   0.0035
Pumilio    3/6      85   121 ..     1    39 []    14.2      6.7
Pumilio    4/6     198   233 ..     1    39 []    25.7   0.0063
Pumilio    5/6     234   270 ..     1    39 []    11.6       14
Pumilio    6/6     272   308 ..     1    39 []    12.9      9.8

Alignments of top-scoring domains:
Pumilio: domain 1 of 6, from 13 to 48: score 26.2, E = 0.0046
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      +i+g++ +++  + ++rViQ+++++++e+   q+++ ++   
   mKIAA0020    13    LIQGKIKTIAFAHDSTRVIQCFIQYGNEE---QRKQAFQ    48   

Pumilio: domain 2 of 6, from 49 to 84: score 26.6, E = 0.0035
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      e++g+l+eLsk +y+ +++ k+l ++s++   q+ eii+   
   mKIAA0020    49    ELQGDLVELSKAKYSRNIVKKFLMYGSKP---QVAEIIR    84   

Pumilio: domain 3 of 6, from 85 to 121: score 14.2, E = 6.7
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ++kgh+ ++  +  ++ +++++ +     e  q++++++   
   mKIAA0020    85    SFKGHVRKMLRHSEASAIVEYAYNDKAILE--QRNMLTE    121  

Pumilio: domain 4 of 6, from 198 to 233: score 25.7, E = 0.0063
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      +i++ +++L++ + G rV  ++l+h++++   +++ i++   
   mKIAA0020   198    AIREAVVYLAHTHDGARVAMHCLWHGTPK---DRKVIVK    233  

Pumilio: domain 5 of 6, from 234 to 270: score 11.6, E = 14
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ++k ++++ ++ qy+  V+  ++++ +  +   +++ii    
   mKIAA0020   234    TMKTYVEKVANGQYSHLVLLAAFDCIDDTK--LVKQIII    270  

Pumilio: domain 6 of 6, from 272 to 308: score 12.9, E = 9.8
                   *->eikghlleLskdqyGnrViQkllehaseseelqkeeiid<-*
                      ei+ +l+++++d+yG  V+ +l    ++++   + e+i+   
   mKIAA0020   272    EIISSLPSIVNDKYGRKVLLYLMSPRDPAH--TVPELIE    308  

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