hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mtk/mtk00084/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0020  ( 496 res)   mtk00084

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CPL      CPL (NUC119) domain                            350.1   2.4e-101   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CPL        1/1     281   428 ..     1   160 []   350.1 2.4e-101

Alignments of top-scoring domains:
CPL: domain 1 of 1, from 281 to 428: score 350.1, E = 2.4e-101
                   *->indkYGrKVilYLvsPRDpahfvpelIelLeeGDgnahSKKdkklRr
                      +ndkYGrKV+lYL+sPRDpah+vpelIelL++GDgnahSKKd+++Rr
   mKIAA0020   281    VNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRR 327  

                   keLLesIsppLlsYLaehiqEvVleankskFvAAcllvtSslglatGdvl
                   +eLLesIsp+LlsYL++h+qEvVl++      +Ac+lv+++lg+atGdv 
   mKIAA0020   328 RELLESISPALLSYLQGHTQEVVLDK------SACVLVSDMLGSATGDV- 370  

                   aeirGqsvmkAiasLAakefvPggqeGelhIiehpAGhlvLkwllrqDkk
                        q++m+AiasLAa+e++Pgg++Gelh++ehpAGhlvLkwll+qDkk
   mKIAA0020   371 -----QPAMDAIASLAAAELHPGGKDGELHVAEHPAGHLVLKWLLEQDKK 415  

                   lkedgkEgilAka<-*
                   +ke+gkEg++Ak+   
   mKIAA0020   416 MKESGKEGCFAKT    428  

//