hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12253/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0019  ( 841 res)   mpm12253

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      Domain in Tre-2, BUB2p, and Cdc16p. Probable   275.3    4.6e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     119   337 ..     1   310 []   275.3  4.6e-78

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 119 to 337: score 275.3, E = 4.6e-78
                   *->vrkGvppslRgeVWklLlnaqpmntsnweraqkakdaesqflvvndd
                      ++kG+p +lRgeVW lLl++++m+ +                     
   mKIAA0019   119    IYKGIPLQLRGEVWALLLEIPKMKEET-------------------- 145  

                   rlkdeYsrllnqtapkdkstdleqavssnnkdfeeqPLsiwnffqdndsl
                     +d+Ys+l++++ +++ ++                              
   mKIAA0019   146 --RDLYSKLKHRARGCSPDI------------------------------ 163  

                   dqIekDlkRTfpelsfFqfrsrdnqkevllddengpgqesLrrvLkaYsl
                    qI++D++RTf+++++F  r+r+           g++q+sL++vL aYs+
   mKIAA0019   164 RQIDLDVNRTFRDHIMF--RDRY-----------GVKQQSLFHVLAAYSI 200  

                   ynpehivgYcQGmnflaapLLlvmpiydEedAFwcfvkLmerylpnflfk
                   yn+e  vgYcQGm+ ++a+LL++m   +EedAFw++vkL++ +       
   mKIAA0019   201 YNTE--VGYCQGMSQITALLLMYM---NEEDAFWALVKLFSGP------- 238  

                   dtnnfytpdlsglqadqlvldslleeylPeLykHLqeqdkqsk.kkhvdk
                         ++ ++g++ + +    +++e+++++ +++++     k k+h+d+
   mKIAA0019   239 ------KHAMHGFFVQGFPKLLRFQEHHEKILNKFLS-----KlKQHLDS 277  

                   leidpslyalrWfLtlFarelPledvlRiwDvlfaellrlgseflfkial
                   +ei +s+y++ Wf+++F +  P+ + lRiwD++ +e    g+++l +++ 
   mKIAA0019   278 QEIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYIFE----GERVLTAMSY 323  

                   aiLklnedkllkld<-*
                   +iLkl++++l+kl    
   mKIAA0019   324 TILKLHKKHLMKLS    337  

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