hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm12253/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0019  ( 841 res)   mpm12253

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TBC      TBC domain                                     100.4    3.5e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TBC        1/1     119   336 ..     1   219 []   100.4  3.5e-26

Alignments of top-scoring domains:
TBC: domain 1 of 1, from 119 to 336: score 100.4, E = 3.5e-26
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      +  G p+  r++VWa+++  + ++    + Y +l  r  +     + 
   mKIAA0019   119    IYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPD-IR 164  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +I+ Dv+Rt      F  r  G+ +++L  vL AYs  n +vgYcQGM  
   mKIAA0019   165 QIDLDVNRTFRDHIMFRDR-YGVKQQSLFHVLAAYSIYNTEVGYCQGMSQ 213  

                   vaApfLllykSEeqAFyfLdrLl...envvPlKYylpdldGvrlDqkvLd
                   + A +L+ +  Ee+AF+ L +L +++   + + ++       ++ q   +
   mKIAA0019   214 ITALLLMYM-NEEDAFWALVKLFsgpKHAMHG-FFVQGFPKLLRFQEHHE 261  

                   sfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLF
                   + +   l +L  +L s  +  + + + wf   + +  P    lrI+Di  
   mKIAA0019   262 KILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYI 311  

                   adGivllfrvaLAvLkilkeqiLda<-*
                    +G  +l     ++Lk  k  ++     
   mKIAA0019   312 FEGERVLTAMSYTILKLHKKHLMKL    336  

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