hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00709/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0018  ( 559 res)   mfj00709

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
FAD_binding_4 FAD binding domain                         22.1    0.00033   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
FAD_binding_4   1/1     107   246 ..     1   144 []    22.1  0.00033

Alignments of top-scoring domains:
FAD_binding_4: domain 1 of 1, from 107 to 246: score 22.1, E = 0.00033
                   *->P.aavvrPeseeevaaivrlArehgipvtprGgGhslsfGgavplnt
                      P++   r+++++  ++ ++    + +  t r g   +s+  + +   
   mKIAA0018   107    PrLHEQRVRDIQKQVREWKEQGSKTFMCTGRPGWLTVSLRVGKYK-K 152  

                   gG..vvldlsrrlnriileiDpetdgtatveaGvtl.dLnralaahGlfl
                     ++++++l   ++  ile+D   + +++ve+ v ++++ + l+  G++l
   mKIAA0018   153 THknIMINL---MD--ILEVDTK-KQIVRVEPLVSMgQVTALLNSIGWTL 196  

                   pldpgsgipgtvGGaiatnagGygsekyGltrdnvlglevVladGevvrl
                   p+ p   +  tvGG+i + ++ + s+kyGl+ + +++ e++ladG+ vr+
   mKIAA0018   197 PVLPELDDL-TVGGLIMGTGIESSSHKYGLFQHICTAYELILADGSFVRC 245  

                   s<-*
                   +   
   mKIAA0018   246 T    246  

//