hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11108/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0017  ( 1131 res)   mpm11108

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CPSF_A   CPSF A subunit region                          381.8   6.9e-111   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CPSF_A     1/1     757  1073 ..     1   334 []   381.8 6.9e-111

Alignments of top-scoring domains:
CPSF_A: domain 1 of 1, from 757 to 1073: score 381.8, E = 6.9e-111
                   *->ekevssirlidpntfevihdAsheFeq..nEaalSv..asvklsnee
                      e+    i  i+ nt  +++    ++++  n +a+ ++ ++ k+ +++
   mKIAA0017   757    EQCPEGIVAISTNTLRILA--LEKLGAvfNQVAFPLqyTPRKFVIHP 801  

                   ttkdkntYlvVGTainypeeietv...........PsrGrilvFevidVV
                   +   +n  +++ T  n   e +  +++++  ++++   G+++++++ +  
   mKIAA0017   802 E---SNNLIIIETDHNAYTEATKAqrkqqilsprsVAGGFVYTYKLVN-- 846  

                   PePGkPetgnKLklvaetevkGsVyalcefnGrllagiGqkvriydltek
                          +g+KL+++++t+v+++++a+ +f+Gr+l+g+G+ +r+ydl++ 
   mKIAA0017   847 -------NGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGK- 888  

                   eknekeLrkesfidtpiyildikvrgnfIlvaDvmkSvslLrykeeegql
                      +k+Lrk++++++ +yi  i+++g++++v+Dv++S++++ryk++e+ql
   mKIAA0017   889 ---KKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQL 935  

                   ievARDtnplwvtsvefLdddtnLyflgaDasgNlfvlrydpeapeevde
                   i++A+Dt+p+wvt++++Ld+dt   ++gaD++gN++v+r++p++++evde
   mKIAA0017   936 IIFADDTYPRWVTTASLLDYDT---VAGADKFGNICVVRLPPNTNDEVDE 982  

                   dptesKliwdrGltslerqkLesvgdFHlGetvnsmqhgslvmknlgdsy
                   dpt++K++wdrGl+++++qk e+++++H+Getv s+q+++l+        
   mKIAA0017   983 DPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLI-------- 1024 

                   gydtgaspsllfgTvdGaIGvivpliseedyrfLlqLqnaLrkvipslgG
                      +g s+sl+++T++G+IG++vp++s ed++f+++++++Lr+++p+l+G
   mKIAA0017  1025 ---PGGSESLVYTTLSGGIGILVPFTSYEDHDFFQHVEMHLRSEHPPLCG 1071 

                   ld<-*
                   +d   
   mKIAA0017  1072 RD    1073 

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