hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpk/mpk02476/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0016  ( 162 res)   mpk02476

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
MAS20    MAS20 protein import receptor                   -4.8    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
MAS20      1/1      14   159 ..     1   184 []    -4.8  0.00012

Alignments of top-scoring domains:
MAS20: domain 1 of 1, from 14 to 159: score -4.8, E = 0.00012
                   *->MsqSnavlrtlAivaAvAalsalaYAvYFDYkRRNdPeFRkvLRrrA
                       s  + v r  Ai a v    +++Y +YFD kRR dP F   LR r 
   mKIAA0016    14    -SRAKMVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERR 59   

                   krQAkqEkeakelakevklQkvrefldmElkkdgiPsdsdEkEAyFlenV
                   k+Q k  ke + l+      k  ++ d E+ +             Fle++
   mKIAA0016    60 KKQ-KLAKERAGLS------KLPDLKDAEAVQK-----------FFLEEI 91   

                   eaGEiLsqdqtKeldAalkFYKALkVYPtPaDLlsIYdksvakaIldili
                   + GE L   q+           A  V  +P  Ll + +++ + +++ +l 
   mKIAA0016    92 QLGEEL-LAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLL 140  

                   lMIAilPslkvasnyvkGVvvaklerdavaeanvilD<-*
                            k  +          +    v++     D   
   mKIAA0016   141 --------TKLPT----------ISQRIVSAQSLAED    159  

//