hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11170/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0015  ( 313 res)   mpm11170

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PP2Cc    Serine/threonine phosphatases, family 2C, ca   278.4    5.4e-79   1
PP2C_SIG Sigma factor PP2C-like phosphatases             31.2    8.8e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PP2Cc      1/1       2   269 ..     1   338 []   278.4  5.4e-79
PP2C_SIG   1/1      29   271 ..     1   250 []    31.2  8.8e-05

Alignments of top-scoring domains:
PP2Cc: domain 1 of 1, from 2 to 269: score 278.4, E = 5.4e-79
                   *->es.sgknlglryglgessmqgwrkpmEDahvirp.............
                      ++ + +++++++ ++++++ + r++mED+hv  p  ++  + +++ +
   mKIAA0015     2    VPlTAQAPQWQWLVSIHAIRNTRRKMEDRHVSLPafnhlfglsdsvh 48   

                   ..ffgVfDGHGGseaakflsknlheilaeelsfdkdeslkeneelkdepe
                   + +f+VfDGHGG +aa+++s + h +   +++  +               
   mKIAA0015    49 raYFAVFDGHGGVDAARYASVHVHTNASHQPELRTN-------------- 84   

                   sserlngdksledveealrkaFlrtdeei............sTAvvalir
                                + +al++aF+ tde + ++ ++++ ++++T v+ali 
   mKIAA0015    85 -------------PAAALKEAFRLTDEMFlqkakrerlqsgTTGVCALIA 121  

                   gnklyvANvGDSRavLcrngkdswegvrtysavqLteDHkpsnedEreRI
                   g  l+vA++GDS+++L ++g           +v L e Hkp+++dE++RI
   mKIAA0015   122 GAALHVAWLGDSQVILVQQGR----------VVKLMEPHKPERQDEKARI 161  

                   eaaGGevepidrefvsngggvvwRvnGvvisLavsRalGDfelKkkedel
                   ea+GG        fvs  ++  wRvnG+   LavsRa+GD++ K      
   mKIAA0015   162 EALGG--------FVSLMDC--WRVNGT---LAVSRAIGDVFQK------ 192  

                   ieenrlyekfdprlpgkepyvsaePevtvvelsqtlvptedddfliLASD
                                     pyvs e +  ++el      t + d l+LA+D
   mKIAA0015   193 ------------------PYVSGEADAASREL------TGSEDYLLLACD 218  

                   GLWDvlsnqeavdivrkhlrkgddkevksaaqelaradslrskkhndpke
                   G +Dv++++e+  +v+ hl + +                       + ++
   mKIAA0015   219 GFFDVVPHHEVTGLVHGHLLRHKG----------------------NGMR 246  

                   aaklLvdlAl....kDNiTvvvv<-*
                   +a++Lv  A++++++DNiTv+vv   
   mKIAA0015   247 IAEELVAVARdrgsHDNITVMVV    269  

PP2C_SIG: domain 1 of 1, from 29 to 271: score 31.2, E = 8.8e-05
                   *->vdggliaayyeeatqvgGDyydvialpegkdrlliaiaDvmGwAkGl
                      ++++  +a++           +   +  +  r  +a+ D++G   G+
   mKIAA0015    29    DRHVSLPAFNH---------LFGLSDSVH--RAYFAVFDGHG---GV 61   

                   aAalamsm.lrsalrtllse..slsqilerlnraiyen.....neeedgm
                    Aa+++s ++++   ++  ++++++ +l+++ r+ +e+  ++   e    
   mKIAA0015    62 DAARYASVhVHTNASHQPELrtNPAAALKEAFRLTDEMflqkaKRERLQS 111  

                   faTlflalyvldfatgtlsyanaGhsppyllraqdgglveilsdtslvqe
                   ++T ++al+    a++ l++a  G+s + l+   +g+ v   +       
   mKIAA0015   112 GTTGVCALI----AGAALHVAWLGDSQVILVQ--QGRVVKLMEP------ 149  

                   lagggideedakhhprknvlgapLGlepdve...................
                                +++ + +  +LG ++ +++  + +++   ++  ++  
   mKIAA0015   150 ---------HKPERQDEKARIEALGGFVSLMdcwrvngtlavsraigdvf 190  

                   ..........vdvrevtlepGDllllyTDGltearseqgeffgeerLeel
                   +++  +++ ++ +re+t  + D lll+ DG ++++ +++       + +l
   mKIAA0015   191 qkpyvsgeadAASRELTGSE-DYLLLACDGFFDVVPHHE-------VTGL 232  

                   lealvgsepqeiaqrilaellefaggangeDDiTvvvvkv<-*
                   +  ++  +++   + i++el + a +++ +D+iTv+vv +   
   mKIAA0015   233 VHGHLLRHKGNGMR-IAEELVAVARDRGSHDNITVMVVFL    271  

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